Literature DB >> 35021084

ATRX loss in glioma results in dysregulation of cell-cycle phase transition and ATM inhibitor radio-sensitization.

Tingting Qin1, Brendan Mullan2, Ramya Ravindran2, Dana Messinger2, Ruby Siada2, Jessica R Cummings2, Micah Harris2, Ashwath Muruganand2, Kalyani Pyaram3, Zachary Miklja2, Mary Reiber2, Taylor Garcia2, Dustin Tran2, Carla Danussi4, Jacqueline Brosnan-Cashman5, Drew Pratt6, Xinyi Zhao7, Alnawaz Rehemtulla7, Maureen A Sartor8, Sriram Venneti6, Alan K Meeker5, Jason T Huse4, Meredith A Morgan7, Pedro R Lowenstein9, Maria G Castro9, Viveka Nand Yadav2, Carl Koschmann10.   

Abstract

ATRX, a chromatin remodeler protein, is recurrently mutated in H3F3A-mutant pediatric glioblastoma (GBM) and isocitrate dehydrogenase (IDH)-mutant grade 2/3 adult glioma. Previous work has shown that ATRX-deficient GBM cells show enhanced sensitivity to irradiation, but the etiology remains unclear. We find that ATRX binds the regulatory elements of cell-cycle phase transition genes in GBM cells, and there is a marked reduction in Checkpoint Kinase 1 (CHEK1) expression with ATRX loss, leading to the early release of G2/M entry after irradiation. ATRX-deficient cells exhibit enhanced activation of master cell-cycle regulator ATM with irradiation. Addition of the ATM inhibitor AZD0156 doubles median survival in mice intracranially implanted with ATRX-deficient GBM cells, which is not seen in ATRX-wild-type controls. This study demonstrates that ATRX-deficient high-grade gliomas (HGGs) display Chk1-mediated dysregulation of cell-cycle phase transitions, which opens a window for therapies targeting this phenotype.
Copyright © 2021. Published by Elsevier Inc.

Entities:  

Keywords:  ATM inhibitor; ATRX; CHEK1; cell-cycle; epigenetics; glioma

Mesh:

Substances:

Year:  2022        PMID: 35021084      PMCID: PMC8759735          DOI: 10.1016/j.celrep.2021.110216

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.995


  58 in total

1.  The somatic genomic landscape of glioblastoma.

Authors:  Cameron W Brennan; Roel G W Verhaak; Aaron McKenna; Benito Campos; Houtan Noushmehr; Sofie R Salama; Siyuan Zheng; Debyani Chakravarty; J Zachary Sanborn; Samuel H Berman; Rameen Beroukhim; Brady Bernard; Chang-Jiun Wu; Giannicola Genovese; Ilya Shmulevich; Jill Barnholtz-Sloan; Lihua Zou; Rahulsimham Vegesna; Sachet A Shukla; Giovanni Ciriello; W K Yung; Wei Zhang; Carrie Sougnez; Tom Mikkelsen; Kenneth Aldape; Darell D Bigner; Erwin G Van Meir; Michael Prados; Andrew Sloan; Keith L Black; Jennifer Eschbacher; Gaetano Finocchiaro; William Friedman; David W Andrews; Abhijit Guha; Mary Iacocca; Brian P O'Neill; Greg Foltz; Jerome Myers; Daniel J Weisenberger; Robert Penny; Raju Kucherlapati; Charles M Perou; D Neil Hayes; Richard Gibbs; Marco Marra; Gordon B Mills; Eric Lander; Paul Spellman; Richard Wilson; Chris Sander; John Weinstein; Matthew Meyerson; Stacey Gabriel; Peter W Laird; David Haussler; Gad Getz; Lynda Chin
Journal:  Cell       Date:  2013-10-10       Impact factor: 41.582

2.  Alternative lengthening of telomeres renders cancer cells hypersensitive to ATR inhibitors.

Authors:  Rachel Litman Flynn; Kelli E Cox; Maya Jeitany; Hiroaki Wakimoto; Alysia R Bryll; Neil J Ganem; Francesca Bersani; Jose R Pineda; Mario L Suvà; Cyril H Benes; Daniel A Haber; Francois D Boussin; Lee Zou
Journal:  Science       Date:  2015-01-16       Impact factor: 47.728

3.  Mutations in a putative global transcriptional regulator cause X-linked mental retardation with alpha-thalassemia (ATR-X syndrome).

Authors:  R J Gibbons; D J Picketts; L Villard; D R Higgs
Journal:  Cell       Date:  1995-03-24       Impact factor: 41.582

4.  ATR-X syndrome protein targets tandem repeats and influences allele-specific expression in a size-dependent manner.

Authors:  Martin J Law; Karen M Lower; Hsiao P J Voon; Jim R Hughes; David Garrick; Vip Viprakasit; Matthew Mitson; Marco De Gobbi; Marco Marra; Andrew Morris; Aaron Abbott; Steven P Wilder; Stephen Taylor; Guilherme M Santos; Joe Cross; Helena Ayyub; Steven Jones; Jiannis Ragoussis; Daniela Rhodes; Ian Dunham; Douglas R Higgs; Richard J Gibbons
Journal:  Cell       Date:  2010-10-29       Impact factor: 41.582

5.  Loss of ATRX, genome instability, and an altered DNA damage response are hallmarks of the alternative lengthening of telomeres pathway.

Authors:  Courtney A Lovejoy; Wendi Li; Steven Reisenweber; Supawat Thongthip; Joanne Bruno; Titia de Lange; Saurav De; John H J Petrini; Patricia A Sung; Maria Jasin; Joseph Rosenbluh; Yaara Zwang; Barbara A Weir; Charlie Hatton; Elena Ivanova; Laura Macconaill; Megan Hanna; William C Hahn; Neal F Lue; Roger R Reddel; Yuchen Jiao; Kenneth Kinzler; Bert Vogelstein; Nickolas Papadopoulos; Alan K Meeker
Journal:  PLoS Genet       Date:  2012-07-19       Impact factor: 5.917

6.  HTSeq--a Python framework to work with high-throughput sequencing data.

Authors:  Simon Anders; Paul Theodor Pyl; Wolfgang Huber
Journal:  Bioinformatics       Date:  2014-09-25       Impact factor: 6.937

7.  G-quadruplex DNA drives genomic instability and represents a targetable molecular abnormality in ATRX-deficient malignant glioma.

Authors:  Yuxiang Wang; Jie Yang; Aaron T Wild; Wei H Wu; Rachna Shah; Carla Danussi; Gregory J Riggins; Kasthuri Kannan; Erik P Sulman; Timothy A Chan; Jason T Huse
Journal:  Nat Commun       Date:  2019-02-26       Impact factor: 14.919

8.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.

Authors:  Mark D Robinson; Davis J McCarthy; Gordon K Smyth
Journal:  Bioinformatics       Date:  2009-11-11       Impact factor: 6.937

9.  ATRX binds to atypical chromatin domains at the 3' exons of zinc finger genes to preserve H3K9me3 enrichment.

Authors:  David Valle-García; Zulekha A Qadeer; Domhnall S McHugh; Flávia G Ghiraldini; Asif H Chowdhury; Dan Hasson; Michael A Dyer; Félix Recillas-Targa; Emily Bernstein
Journal:  Epigenetics       Date:  2016-03-30       Impact factor: 4.528

10.  ATRX loss induces multiple hallmarks of the alternative lengthening of telomeres (ALT) phenotype in human glioma cell lines in a cell line-specific manner.

Authors:  Jacqueline A Brosnan-Cashman; Ming Yuan; Mindy K Graham; Anthony J Rizzo; Kaylar M Myers; Christine Davis; Rebecca Zhang; David M Esopi; Eric H Raabe; Charles G Eberhart; Christopher M Heaphy; Alan K Meeker
Journal:  PLoS One       Date:  2018-09-18       Impact factor: 3.240

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  3 in total

1.  Therapeutic Vulnerability to ATR Inhibition in Concurrent NF1 and ATRX-Deficient/ALT-Positive High-Grade Solid Tumors.

Authors:  Ming Yuan; Charles G Eberhart; Christine A Pratilas; Jaishri O Blakeley; Christine Davis; Marija Stojanova; Karlyne Reilly; Alan K Meeker; Christopher M Heaphy; Fausto J Rodriguez
Journal:  Cancers (Basel)       Date:  2022-06-19       Impact factor: 6.575

2.  A Targeted Next-Generation Sequencing Panel to Genotype Gliomas.

Authors:  Maria Guarnaccia; Laura Guarnaccia; Valentina La Cognata; Stefania Elena Navone; Rolando Campanella; Antonella Ampollini; Marco Locatelli; Monica Miozzo; Giovanni Marfia; Sebastiano Cavallaro
Journal:  Life (Basel)       Date:  2022-06-24

3.  Machine learning-based screening of an epithelial-mesenchymal transition-related long non-coding RNA signature reveals lower-grade glioma prognosis and the tumor microenvironment and predicts antitumor therapy response.

Authors:  Nan Wang; Xin Gao; Hang Ji; Shuai Ma; Jiasheng Wu; Jiawei Dong; Fang Wang; Hongtao Zhao; Zhihui Liu; Xiuwei Yan; Bo Li; Jianyang Du; Jiheng Zhang; Shaoshan Hu
Journal:  Front Mol Biosci       Date:  2022-08-26
  3 in total

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