Literature DB >> 35018501

Structural and molecular properties of complexes of biomolecules and metal-organic frameworks: dispersion-corrected DFT treatment.

Anahita Bakhshandeh1, Fatemeh Ardestani2, Hamid Reza Ghorbani1, Masoud Darvish Ganji3.   

Abstract

Investigation of complexes of nanostructured materials and biomolecules has attracted much attention by various researchers as it can contribute to coherent growth and extended application of nanostructures in different technologies. In this research, following a comprehensive approach, we examined the interaction between different amino acids and metal-organic frameworks (MOFs) at atomic scale using computational chemistry. For this purpose, we employed the density functional theory (DFT-D2) calculations to afford a molecular description of the interaction properties of the amino acids and MOF-5 by examining the interaction energy and the electronic structure of the amino acid/MOF complexes. We found strong interactions between the amino acids and MOF through their polar groups as well as aromatic rings in the gas phase. However, our findings were significantly different in solvent media, where water molecules prevent the amino acids from approaching the active sites of MOF, causing weak attractions between them. The evaluation of nature of interaction between the amino acids and MOF by the atoms-in-molecules (AIM) theory shows that the electrostatic attractions are the main force contributing to bond formation between the interacting entities. Furthermore, our DFT-PBE model of theory was validated against the comprehensive MP2 quantum level of theory.
© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  AIM; Amino acids; DFT; Interaction; MOF

Year:  2022        PMID: 35018501     DOI: 10.1007/s00894-021-04947-2

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  19 in total

1.  Carbon nanotubes: Fibrillar pharmacology.

Authors:  Kostas Kostarelos
Journal:  Nat Mater       Date:  2010-10       Impact factor: 43.841

2.  Metal-Organic Framework (MOF) Defects under Control: Insights into the Missing Linker Sites and Their Implication in the Reactivity of Zirconium-Based Frameworks.

Authors:  Oleksii V Gutov; Miguel González Hevia; Eduardo C Escudero-Adán; Alexandr Shafir
Journal:  Inorg Chem       Date:  2015-08-20       Impact factor: 5.165

Review 3.  A review of physiological and metabolic effects of essential amino acids.

Authors:  K A Massey; C H Blakeslee; H S Pitkow
Journal:  Amino Acids       Date:  1998       Impact factor: 3.520

Review 4.  Enzymatic asymmetric synthesis of chiral amino acids.

Authors:  Ya-Ping Xue; Cheng-Hao Cao; Yu-Guo Zheng
Journal:  Chem Soc Rev       Date:  2018-02-19       Impact factor: 54.564

5.  Application of MOF-based materials in electrochemical sensing.

Authors:  Teng Ma; Huibo Li; Jian-Gong Ma; Peng Cheng
Journal:  Dalton Trans       Date:  2020-11-13       Impact factor: 4.390

6.  Ligand-assisted enhancement of CO2 capture in metal-organic frameworks.

Authors:  Roberta Poloni; Berend Smit; Jeffrey B Neaton
Journal:  J Am Chem Soc       Date:  2012-04-10       Impact factor: 15.419

7.  Construction of Molecular Sensing and Logic Systems Based on Site-Occupying Effect-Modulated MOF-DNA Interaction.

Authors:  Kaihua Yu; Tianxiang Wei; Zijun Li; Junyao Li; Zhaoyin Wang; Zhihui Dai
Journal:  J Am Chem Soc       Date:  2020-12-11       Impact factor: 15.419

8.  MOF-templated synthesis of porous Co(3)O(4) concave nanocubes with high specific surface area and their gas sensing properties.

Authors:  Yinyun Lü; Wenwen Zhan; Yue He; Yiting Wang; Xiangjian Kong; Qin Kuang; Zhaoxiong Xie; Lansun Zheng
Journal:  ACS Appl Mater Interfaces       Date:  2014-03-07       Impact factor: 9.229

9.  Building a robust 3D Ca-MOF by a new square Ca4O SBU for purification of natural gas.

Authors:  Falu Hu; Zhengyi Di; Mingyan Wu; Jing Li
Journal:  Dalton Trans       Date:  2020-07-07       Impact factor: 4.390

10.  Neural metabolic imbalance induced by MOF dysfunction triggers pericyte activation and breakdown of vasculature.

Authors:  Bilal N Sheikh; Sukanya Guhathakurta; Tsz Hong Tsang; Marius Schwabenland; Gina Renschler; Benjamin Herquel; Vivek Bhardwaj; Herbert Holz; Thomas Stehle; Olga Bondareva; Nadim Aizarani; Omar Mossad; Oliver Kretz; Wilfried Reichardt; Aindrila Chatterjee; Laura J Braun; Julien Thevenon; Herve Sartelet; Thomas Blank; Dominic Grün; Dominik von Elverfeldt; Tobias B Huber; Dietmar Vestweber; Sergiy Avilov; Marco Prinz; Joerg M Buescher; Asifa Akhtar
Journal:  Nat Cell Biol       Date:  2020-06-15       Impact factor: 28.213

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