| Literature DB >> 35015809 |
Sebastiaan C Boone, Maarten van Smeden, Frits R Rosendaal, Saskia le Cessie, Rolf H H Groenwold, J Wouter Jukema, Ko Willems van Dijk, Hildo J Lamb, Philip Greenland, Ian J Neeland, Matthew A Allison, Michael H Criqui, Matthew J Budoff, Lars L Lind, Joel Kullberg, Håkan Ahlström, Dennis O Mook-Kanamori, Renée de Mutsert.
Abstract
Visceral adipose tissue (VAT) is a strong prognostic factor for cardiovascular disease and a potential target for cardiovascular risk stratification. Because VAT is difficult to measure in clinical practice, we estimated prediction models with predictors routinely measured in general practice and VAT as outcome using ridge regression in 2,501 middle-aged participants from the Netherlands Epidemiology of Obesity study, 2008-2012. Adding waist circumference and other anthropometric measurements on top of the routinely measured variables improved the optimism-adjusted R2 from 0.50 to 0.58 with a decrease in the root-mean-square error (RMSE) from 45.6 to 41.5 cm2 and with overall good calibration. Further addition of predominantly lipoprotein-related metabolites from the Nightingale platform did not improve the optimism-corrected R2 and RMSE. The models were externally validated in 370 participants from the Prospective Investigation of Vasculature in Uppsala Seniors (PIVUS, 2006-2009) and 1,901 participants from the Multi-Ethnic Study of Atherosclerosis (MESA, 2000-2007). Performance was comparable to the development setting in PIVUS (R2 = 0.63, RMSE = 42.4 cm2, calibration slope = 0.94) but lower in MESA (R2 = 0.44, RMSE = 60.7 cm2, calibration slope = 0.75). Our findings indicate that the estimation of VAT with routine clinical measurements can be substantially improved by incorporating waist circumference but not by metabolite measurements.Entities:
Keywords: added value; development; external validation; metabolomics; prediction; visceral adipose tissue
Mesh:
Year: 2022 PMID: 35015809 PMCID: PMC9071575 DOI: 10.1093/aje/kwab298
Source DB: PubMed Journal: Am J Epidemiol ISSN: 0002-9262 Impact factor: 5.363
Characteristics of the Model Development Population (n = 2,501) of the Netherlands Epidemiology of Obesity Study, the Netherlands, 2008–2012
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| Age, years | 56 (51–61) | 56 (51–61) | 56 (51–61) | |||
| Male sex | 1,311 | 52.4 | ||||
| White ethnicity | 2,394 | 95.9 | 1,265 | 96.7 | 1,129 | 95.0 |
| Body fat and distribution | ||||||
| Height, m | 1.74 (0.10) | 1.81 (0.07) | 1.66 (0.06) | |||
| Weight, kg | 89.2 (15.2) | 96.0 (12.7) | 81.7 (14.2) | |||
| Body mass index | 29.5 (4.2) | 29.4 (3.4) | 29.5 (4.8) | |||
| Waist circumference, cm | 101 (12) | 105 (10) | 96 (13) | |||
| Hip circumference, cm | 109 (9) | 108 (7) | 110 (10) | |||
| Waist-to-hip ratio | 0.92 (0.08) | 0.97 (0.06) | 0.87 (0.07) | |||
| Body fat percentage | 33.8 (27.8–42.2) | 28.5 (25.1–31.9) | 42.3 (38.1–45.4) | |||
| Visceral adipose tissue, cm2 | 114 (76–157) | 134 (100–176) | 89 (59–128) | |||
| >100 cm2a | 1,478 | 59.1 | 978 | 74.6 | 500 | 42.0 |
| Laboratory measurements | ||||||
| Glucose, mmol/L | 5.5 (5.1–6.0) | 5.6 (5.2–6.1) | 5.4 (5.0–5.9) | |||
| Insulin, IU | 10.5 (6.8–15.4) | 11.5 (7.4–16.7) | 9.7 (6.3–14.3) | |||
| Triglycerides, mmol/L | 1.3 (0.9–1.8) | 1.4 (1.0–2.0) | 1.1 (0.8–1.5) | |||
| HDL-C, mmol/L | 1.4 (0.4) | 1.3 (0.3) | 1.6 (0.4) | |||
| Total cholesterol, mmol/L | 5.7 (1.1) | 5.6 (1.1) | 5.8 (1.1) | |||
| Total cholesterol/HDL-C ratio | 4.1 (3.3–5.0) | 4.5 (3.8–5.5) | 3.6 (3.0–4.4) | |||
Abbreviations: HDL-C, high-density lipoprotein cholesterol; IQR, interquartile range; IU, international units; SD, standard deviation.
a Values are expressed as numbers and percentages.
b Weight (kg)/height (m)2.
Bootstrap-Optimism Corrected Estimates of Model Performance for Development and Internal Validation, the Netherlands Epidemiology of Obesity Study (n = 2,501), the Netherlands, 2008–2012
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| 1 | Core | 0.60 | 0.37 | 0.29 | 0.00 | 1.00 | 0.50 | 45.6 | 33.3 | 6.1 | 0.88 | 0.91 | 0.87 | 0.84 |
| 2 | Core + WC | 0.64 | 0.35 | 0.28 | 0.00 | 1.00 | 0.55 | 42.9 | 31.5 | 5.5 | 0.90 | 0.92 | 0.88 | 0.86 |
| 3 | Core + WC + HC | 0.65 | 0.35 | 0.27 | 0.00 | 1.00 | 0.57 | 42.1 | 30.9 | 5.4 | 0.90 | 0.92 | 0.89 | 0.86 |
| 4 | Core + WC + HC + WHR | 0.66 | 0.34 | 0.27 | 0.00 | 1.00 | 0.58 | 41.5 | 30.6 | 5.5 | 0.95 | 0.92 | 0.89 | 0.86 |
| 5 | Core + WC + HC + WHR + insulin | 0.66 | 0.34 | 0.27 | 0.00 | 1.00 | 0.57 | 42.2 | 30.5 | 5.4 | 0.91 | 0.92 | 0.89 | 0.87 |
| 6 | Core + WC + HC + WHR + TBF | 0.66 | 0.34 | 0.27 | 0.00 | 1.00 | 0.58 | 41.2 | 30.4 | 5.4 | 0.94 | 0.92 | 0.89 | 0.86 |
| 7 | Core + WC + HC + WHR + insulin + TBF | 0.66 | 0.34 | 0.27 | 0.00 | 1.00 | 0.57 | 41.8 | 30.4 | 5.3 | 0.91 | 0.92 | 0.89 | 0.87 |
| Ridge | Core + WC + HC + WHR + metabolites | 0.68 | 0.33 | 0.26 | 0.00 | 0.99 | 0.60 | 40.5 | 29.9 | 5.0 | 0.93 | 0.93 | 0.89 | 0.87 |
| LASSO | Core + WC + HC + WHR + metabolites | 0.68 | 0.33 | 0.26 | 0.00 | 0.99 | 0.60 | 40.5 | 29.9 | 5.1 | 0.95 | 0.93 | 0.89 | 0.87 |
Abbreviations: CITL, calibration-in-the-large; HC, hip circumference; LASSO, least absolute shrinkage and selection operator; MAE, mean absolute error; RMSE, root-mean-square error; TBF, total body fat percentage; VAT, visceral adipose tissue; WC, waist circumference; WHR, waist-to-hip ratio.
a The estimates are reported for the development scale (natural logarithm of VAT) and the original scale (in cm2) after back transforming the predicted values.
b The core predictors include age, sex, height, body weight, body mass index, concentrations of total cholesterol, triglycerides, high-density lipoprotein cholesterol and glucose, and the total cholesterol/high-density lipoprotein cholesterol ratio.
Figure 1Calibration plots of models with clinical predictors developed in the Netherlands Epidemiology of Obesity Study (n = 2,501), the Netherlands, 2008–2012. Left column, calibration plots on the natural logarithm scale (development scale): A) core; C) core + waist circumference (WC); E) core + WC + hip circumference (HC) + waist-to-hip ratio (WHR); G) core + WC + HC + WHR + insulin + total body fat percentage (TBF). Right column, calibration plots after back transforming the predicted values to the original scale (in cm2). B) core; D) core + WC; F) core + WC + HC + WHR; H) core + WC + HC + WHR + insulin + TBF. The black dashed line indicates unity (x = y); the black continuous line is a locally weighted scatterplot smoothing curve fitted to the data points. Women, light gray dots; men, dark gray dots. VAT, visceral adipose tissue.
Figure 2Calibration plots of the extended clinical and metabolite-extended models developed in the Netherlands Epidemiology of Obesity Study (n = 2,501), the Netherlands, 2008–2012. A–C) Calibration plots on the natural logarithm scale (development scale): A) Extended clinical model with core predictors, waist circumference (WC), hip circumference (HC), and waist-to-hip ratio (WHR); B) metabolite-extended, ridge; C) metabolite-extended, least absolute shrinkage and selection operator (LASSO). D–F) calibration plots after back transforming the predicted values to the original scale (in cm2): D) extended clinical model with core predictors, WC, HC, and WHR; E) metabolite-extended, ridge; F) metabolite-extended, LASSO. The black dashed line indicates unity (x = y); the black continuous line is a locally weighted scatterplot smoothing curve fitted to the data points. Women, light gray dots; men, dark gray dots. VAT, visceral adipose tissue.
Figure 3Back-to-back histograms and scatterplots of predicted values of ln(VAT) of the extended clinical model (core + waist circumference (WC) + hip circumference (HC) + waist-to-hip ratio (WHR)) versus the metabolite-extended models in the Netherlands Epidemiology of Obesity Study (n = 2,501), the Netherlands, 2008–2012. A–B) back-to-back histograms with predictions from the extended clinical model on the left-hand side and the metabolite extended models on the right-hand side: A) metabolite-extended, ridge; B) metabolite-extended, least absolute shrinkage and selection operator (LASSO). C–D) scatterplots with values predicted by the extended clinical model on the x-axis and values predicted by the extended models on the y-axis: C) metabolite-extended, ridge; D) metabolite-extended, LASSO. The dashed line is the x = y line. VAT, visceral adipose tissue.
Estimates of Model Performance of the Core, Extended Clinical, and Metabolite-Extended Models in the Prospective Investigation of the Vasculature in Uppsala Seniors (n = 370), Uppsala, Sweden, 2006–2009, and the Multi-Ethnic Study of Atherosclerosis (n = 1,901), United States, 2000–2007
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| Logarithmic scale | ||||||||||||
| Mean observed | 4.94 | 4.94 | 4.94 | 4.94 | 4.70 | 4.70 | 4.70 | 4.70 | 4.70 | 4.70 | 4.70 | 4.70 |
| Mean predicted | 4.64 | 4.94 | 4.68 | 4.94 | 4.74 | 4.70 | 4.77 | 4.70 | 3.89 | 4.70 | 4.47 | 4.70 |
| | 0.28 | 0.55 | 0.40 | 0.62 | 0.54 | 0.55 | 0.65 | 0.66 | −8.10 | −5.94 | 0.34 | 0.51 |
| RMSE | 0.49 | 0.38 | 0.44 | 0.35 | 0.38 | 0.37 | 0.33 | 0.32 | 1.67 | 1.46 | 0.45 | 0.39 |
| MAE | 0.41 | 0.30 | 0.37 | 0.28 | 0.30 | 0.30 | 0.26 | 0.25 | 1.31 | 1.22 | 0.36 | 0.30 |
| CITL | 0.30 | 0.00 | 0.27 | 0.00 | −0.04 | 0.00 | −0.07 | 0.00 | 0.81 | 0.00 | 0.23 | 0.00 |
| Slope | 0.87 | 0.87 | 0.92 | 0.92 | 0.93 | 0.93 | 0.97 | 0.97 | −0.03 | −0.03 | 0.96 | 0.96 |
| Original scale | ||||||||||||
| Mean observed | 162.2 | 162.2 | 162.2 | 162.2 | 127.2 | 127.2 | 127.2 | 127.2 | 127.2 | 127.2 | 127.2 | 127.2 |
| Mean predicted | 117.9 | 159.3 | 120.6 | 157.8 | 126.7 | 121.7 | 131.1 | 122.4 | 99.4 | 224.5 | 95.4 | 119.7 |
| | 0.07 | 0.17 | 0.24 | 0.44 | 0.51 | 0.51 | 0.62 | 0.63 | −3.32 | −17.43 | 0.22 | 0.42 |
| RMSE | 78.4 | 74.0 | 70.8 | 60.7 | 49.0 | 48.8 | 42.9 | 42.4 | 144.8 | 298.8 | 61.6 | 53.0 |
| MAE | 58.5 | 47.9 | 53.8 | 43.6 | 36.3 | 35.7 | 31.0 | 30.1 | 106.3 | 193.0 | 42.6 | 37.3 |
| CITL | 44.2 | 2.8 | 41.6 | 4.3 | 0.5 | 5.6 | −3.9 | 4.8 | 27.9 | −97.2 | 31.8 | 7.6 |
| Slope | 0.77 | 0.57 | 0.98 | 0.75 | 0.82 | 0.85 | 0.88 | 0.94 | −0.04 | −0.02 | 1.17 | 0.93 |
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| >70 cm2 | 0.93 | 0.93 | 0.94 | 0.94 | 0.88 | 0.88 | 0.91 | 0.91 | 0.51 | 0.51 | 0.89 | 0.89 |
| >100 cm2 | 0.90 | 0.90 | 0.91 | 0.91 | 0.86 | 0.86 | 0.90 | 0.90 | 0.49 | 0.49 | 0.86 | 0.86 |
| >130 cm2 | 0.88 | 0.88 | 0.90 | 0.90 | 0.81 | 0.81 | 0.86 | 0.86 | 0.46 | 0.46 | 0.80 | 0.80 |
Abbreviations: CITL, calibration-in-the-large; LASSO, least absolute shrinkage and selection operator; MAE, mean absolute error; MESA, Multi-Ethnic Study of Atherosclerosis; PIVUS, Prospective Investigation of the Vasculature in Uppsala Seniors; RMSE, root-mean-square error; VAT, visceral adipose tissue.
a Estimates are reported for the development scale (natural logarithm of VAT) and the original scale (in cm2) after back transforming the predicted values. We report the initial results and the performance after intercept recalibration.
b Core predictors include age, sex, height, body weight, body mass index, total cholesterol, triglycerides, high-density lipoprotein cholesterol, glucose and the total cholesterol/high-density lipoprotein cholesterol ratio.
c The extended clinical model includes the core predictors, waist circumference, hip circumference, and the waist-to-hip ratio.
Figure 4Calibration plots of the external validation of the core and extended clinical models and the metabolite extended models in the Prospective Investigation of the Vasculature in Uppsala Seniors (n = 370), Uppsala, Sweden, 2006–2009. Left column, calibration plots on the natural logarithm scale (development scale): A) core; C) extended; E) metabolite-extended, ridge, G) metabolite-extended, least absolute shrinkage and selection operator (LASSO). Right column, calibration plots of the predicted values back transformed to the original scale (in cm2): B) core; D) extended; F) metabolite-extended, ridge; H) metabolite-extended, LASSO. The black dashed line indicates unity (x = y); the black continuous line is a locally weighted scatterplot smoothing curve fitted to the data points. Light gray dots are women; dark gray dots are men. VAT, visceral adipose tissue.
Figure 5Calibration plots of the external validation of the core and extended clinical models before and after intercept recalibration in the Multi-Ethnic Study of Atherosclerosis (n = 1,901), United States, 2000–2007. Left column, calibration plots on the natural logarithm scale (development scale): A) core; C) core, recalibrated; E) extended; G) extended, recalibrated. Right column, calibration plots after back transforming the predicted values to the original scale (in cm2): B) core; D) core, recalibrated; F) extended; H) extended, recalibrated. To improve plot interpretability, we restricted the axis range in E–H, excluding from 1 to 9 individuals with large overestimations of VAT. The black dashed line indicates unity (x = y); the black continuous line is a locally weighted scatterplot smoothing curve fitted to the data points. Light gray dots are women; dark gray dots are men. VAT, visceral adipose tissue.
Estimates of Model Performance of the Core and Extended Clinical Models Before and After Recalibration Among White (n = 764), Chinese (n = 249), Black (n = 397), and Hispanic (n = 491) Participants of the Multi-Ethnic Study of Atherosclerosis Cohort (n = 1,901), United States, 2000–2007
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| Mean observed | 5.00 | 5.00 | 5.00 | 5.00 | 4.71 | 4.71 | 4.71 | 4.71 | 4.78 | 4.78 | 4.78 | 4.78 | 5.11 | 5.11 | 5.11 | 5.11 |
| Mean predicted | 4.63 | 5.00 | 4.67 | 5.00 | 4.36 | 4.71 | 4.40 | 4.71 | 4.70 | 4.78 | 4.69 | 4.78 | 4.76 | 5.11 | 4.82 | 5.11 |
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| 0.30 | 0.65 | 0.40 | 0.69 | 0.11 | 0.58 | 0.27 | 0.64 | 0.41 | 0.43 | 0.47 | 0.50 | −0.03 | 0.48 | 0.21 | 0.57 |
| RMSE | 0.51 | 0.36 | 0.47 | 0.34 | 0.49 | 0.34 | 0.44 | 0.31 | 0.41 | 0.40 | 0.39 | 0.38 | 0.50 | 0.36 | 0.44 | 0.33 |
| MAE | 0.44 | 0.28 | 0.41 | 0.27 | 0.42 | 0.26 | 0.37 | 0.25 | 0.32 | 0.31 | 0.32 | 0.30 | 0.43 | 0.28 | 0.37 | 0.26 |
| CITL | 0.37 | 0.00 | 0.33 | 0.00 | 0.35 | 0.00 | 0.32 | 0.00 | 0.07 | 0.00 | 0.09 | 0.00 | 0.36 | 0.00 | 0.30 | 0.00 |
| Calibration slope | 0.98 | 0.98 | 1.01 | 1.01 | 0.96 | 0.96 | 0.95 | 0.95 | 0.75 | 0.75 | 0.79 | 0.79 | 0.76 | 0.76 | 0.84 | 0.84 |
| Original scale | ||||||||||||||||
| Mean observed | 174.1 | 174.1 | 174.1 | 174.1 | 125.6 | 125.6 | 125.6 | 125.6 | 134.9 | 134.9 | 134.9 | 134.9 | 184.2 | 184.2 | 184.2 | 184.2 |
| Mean predicted | 116.6 | 168.0 | 120.0 | 166.7 | 85.2 | 121.4 | 89.5 | 122.8 | 125.0 | 134.8 | 122.2 | 133.9 | 130.9 | 186.8 | 136.0 | 182.7 |
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| 0.12 | 0.46 | 0.22 | 0.58 | 0.07 | 0.53 | 0.20 | 0.56 | −0.05 | −0.14 | 0.23 | 0.19 | −0.28 | −0.27 | 0.05 | 0.31 |
| RMSE | 84.6 | 66.6 | 79.5 | 58.1 | 56.1 | 39.7 | 51.8 | 38.6 | 67.1 | 69.9 | 57.5 | 58.8 | 86.2 | 85.9 | 74.4 | 63.1 |
| MAE | 65.5 | 46.4 | 61.7 | 43.6 | 44.6 | 29.7 | 40.0 | 29.1 | 42.5 | 42.7 | 40.7 | 40.4 | 67.5 | 52.7 | 59.0 | 46.5 |
| CITL | 57.5 | 6.1 | 54.1 | 7.4 | 40.4 | 4.1 | 36.1 | 2.8 | 9.8 | 0.1 | 12.7 | 1.0 | 53.3 | −2.6 | 48.2 | 1.5 |
| Calibration slope | 1.06 | 0.74 | 1.22 | 0.88 | 1.18 | 0.83 | 1.10 | 0.80 | 0.49 | 0.45 | 0.64 | 0.58 | 0.61 | 0.43 | 0.86 | 0.64 |
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| >70 cm2 | 0.93 | 0.93 | 0.94 | 0.94 | 0.86 | 0.86 | 0.92 | 0.92 | 0.93 | 0.93 | 0.94 | 0.94 | 0.95 | 0.95 | 0.94 | 0.94 |
| >100 cm2 | 0.93 | 0.93 | 0.92 | 0.92 | 0.88 | 0.88 | 0.89 | 0.89 | 0.85 | 0.85 | 0.86 | 0.86 | 0.94 | 0.94 | 0.95 | 0.95 |
| >130 cm2 | 0.92 | 0.92 | 0.92 | 0.92 | 0.87 | 0.87 | 0.88 | 0.88 | 0.85 | 0.85 | 0.86 | 0.86 | 0.91 | 0.91 | 0.91 | 0.91 |
Abbreviations: CITL, calibration-in-the-large; MAE, mean absolute error; RMSE, root-mean-square error; VAT, visceral adipose tissue.
a Estimates are reported for the development scale (natural logarithm of VAT) and the original scale (in cm2) after back transforming the predicted values. We report the initial results and the performance after intercept recalibration.
b Core predictors include age, sex, height, body weight, body mass index, total cholesterol, triglycerides, high-density lipoprotein cholesterol, glucose, and the total cholesterol/high-density lipoprotein cholesterol ratio.
c The extended clinical model includes the core predictors, waist circumference, hip circumference and the waist-to-hip ratio.