| Literature DB >> 35011612 |
Alice-Anaïs Varlet1, Camille Desgrouas1,2, Cécile Jebane3, Nathalie Bonello-Palot1,4, Patrice Bourgeois1,4, Nicolas Levy1,4, Emmanuèle Helfer3, Noémie Dubois5, René Valero5,6, Catherine Badens1,4, Sophie Beliard5,6.
Abstract
Many proteins are causative for inherited partial lipodystrophies, including lamins, the essential constituents of the nuclear envelope scaffold called the lamina. By performing high throughput sequencing on a panel of genes involved in lipodystrophies, we identified a heterozygous mutation in LMNB2 gene (c.700C > T p.(Arg234Trp)) in a female patient presenting early onset type II diabetes, hypertriglyceridemia, and android fat distribution. This mutation is rare in the general population (frequency 0.013% in GnomAD) and was predicted pathogenic by a set of pathogenicity prediction software. Patient-derived fibroblasts showed nuclear shape abnormalities and premature senescence features, which are two typical cellular phenotypes associated with laminopathies. Moreover, we observed an atypical aggregation of lamin B2 in nucleoplasm, which co-distributes with emerin and lamin A/C, along with an abnormal distribution of lamin A/C at the nuclear envelope. Finally, reducing lamin B2 expression level by siRNA targeted toward LMNB2 transcripts resulted in decreased nuclear anomalies and senescence-associated beta-galactosidase, suggesting a role of the mutated protein in the occurrence of the observed cellular phenotype. Altogether, these results suggest that mutations in lamin B2 could produce premature senescence and partial lipodystrophy features as observed with certain mutants of lamin A/C.Entities:
Keywords: LMNB2; hypertriglyceridemia; lamin B2; lipodystrophy; nuclear envelope; senescence; type 2 diabetes
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Year: 2021 PMID: 35011612 PMCID: PMC8750194 DOI: 10.3390/cells11010050
Source DB: PubMed Journal: Cells ISSN: 2073-4409 Impact factor: 6.600
Figure 1Patient clinical description. (A) Photographs of the patient showing central/android shape obesity with fat accumulation in the facial and supraclavicular regions and abdominal region and fat loss in lower limbs (cushingoid morphotype). (B) Dual energy X-ray absorptiometry (DEXA) showing body fat distribution. (C) Percentage of fat mass compared with the reference curve and abdominal computed tomography (CT) scan confirming the presence of an excessive accumulation of visceral adipose tissue (VAT) and subcutaneous adipose tissue (SAT).
Non-synonymous variants found after filtration.
| Refgene | Mutation | SNP Ref | GnomAD | UMD Score | Mutation Taster |
|---|---|---|---|---|---|
| Exon 24: c.2882G > A | rs76646638 | 0.001423 | 68/100 | Polymorphism | |
| Exon 5: c.700C > T | rs148936043 | 0.0001351 | 100/100 | Disease causing |
Figure 2Bioinformatic analysis of the mutation. (A) Pathogenicity prediction of the mutation of LMNB2 p.(Arg234Trp) by a set of bioinformatics tools. (B) The position of the mutation is located (framed) within the linker 2 of the highly conserved rod domain. The homologous regions from Lamin B1, B2, and A were aligned with Geneious 4.8.5. (C) Multiple sequence alignment on CLUSTAL O 1.2.4.
Figure 3LMNB2 p.(Arg234Trp) mutation induces premature cell senescence. (A) Proportion of proliferative cells by BrdU incorporation during 24 h for control and patient fibroblasts. Mean +/− standard deviation (SD) of four independent experiments; ns compares control with patient condition by the Mann–Whitney test. (B) Left panel: percentage of SA-beta-galactosidase positive cells stained in blue. Mean +/− SD of four independent experiments. ****, p < 0.0001 compares patient with control condition by the Fisher exact test. Right panel: representative pictures of control and patient cells.
Figure 4LMNB2 p.(Arg234Trp) mutation induces abnormally shaped nucleus, lamin B2 aggregation, and lamin A/C preferential location at the nuclear envelope. (A) Confocal images showing abnormally shaped nucleus, lamin B2 aggregation, and intense lamin A/C signal at the nuclear envelope of patient fibroblasts compared with control. Lamin A/C (green) and B2 (red) were marked with appropriate antibodies and DNA with Hoechst. White arrowheads designate typical lamin B2 aggregates. (B) The graph shows the percentages of cells with abnormally shaped nuclei, means +/− standard error (SE) from three independent experiments. ****, p < 0.0001 compares patient with control nucleus by the Fischer exact test. (C) Ratio of lamin A/C signal at the nuclear envelope and in the nucleus. Means +/− SE from three independent experiments. ****, p < 0.0001 compares patient with control condition by the Mann–Whitney test. (D) Confocal images showing co-staining of emerin and lamin B2 in abnormally shaped nuclei. Lamin B2 (green) and emerin (red) were marked with appropriate antibodies and DNA with Hoechst. (E) The graph depicts the mean intensity at the nuclear envelope of lamin B2 (grey) and emerin (blue) for control and patient cells. Means +/− SE from one experiment.
Figure 5Decrease in lamin B2 expression leads to a decrease in nuclear abnormalities in patient cells. (A) Apotome images (objective 63×) showing the decrease in lamin B2 staining after transfection of siRNA targeting LMNB2 for both cell lines and decrease in nuclear abnormalities for patient cells. (B) The graph shows the mean intensity of lamin B2 (mean +/– SE from three independent experiments). Two-way ANOVA was performed on GraphPad, and a significant influence of the siRNA treatment on lamin B2 staining (*, p < 0.05, without difference between cell lines) was observed. (C) The graph depicts the percentage of cells with abnormally shaped nuclei (mean +/− SE from three independent experiments). Two-way ANOVA was performed and measured a significant influence of the column factor (siRNA treatment) and of the interaction between row (cell lines) and column factor on the nuclear anomalies percentage (**, p < 0.01). A multiple comparison test showed a significant difference in the impact of the two different siRNAs on patient cells (p = 0.0008) and not on control cells. (D) Percentage of SA-beta-galactosidase cells (mean +/− SE from three independent experiments). Two-way ANOVA was performed and measured a significant influence of the row factor (cell line) and of the interaction between row (cell lines) and column factor (siRNA treatment) on the percentage of SA-beta-galactosidase cells (**, p < 0.01). A multiple comparison test showed a significant difference in the impact of the two different siRNAs on patient cells (p = 0.0091) and not on control cells.
Clinical features of subjects with lipodystrophy and rare LMNB2 mutations annotated according to the transcript NM_032737.4 (NA: not applicable, NR: not reported).
| Our Publication | Gao et al., 2012 | Hegele et al., 2006 | Hegele et al., 2006 | Akinci et al., 2017 | |
|---|---|---|---|---|---|
| p.(Arg234Trp) | p.(Tyr252His) | p.(Arg235Gln) | p.(Arg235Gln) | p.(Arg235Gln) | |
| Age when fat loss began (years) | - | 12 | 5 | 16 | 13 |
| Age at APL diagnosis (years) | NA | NA | 9 | 30 | NR |
| Diabetes, age at onset (years) | Yes, 19 | No | Yes, 19 | Yes, 37 | Yes |
| Extent of fat loss | Limbs | Symmetrical, face and upper body | Symmetrical, upper body to knees | Symmetrical, upper body to upper thigh | Limbs, trunk, gluteal |
| Excess of fat | Face, neck, trunk | NR | NR | NR | Face, neck |
| Dyslipidemia | Severe | Moderate | Type V | Type IV | Severe |
| Hypertension | No | No | No | Yes | NR |
| Polycystic ovarian syndrome | Yes | Yes | No | Yes | Yes |
| Autoimmune disease | No | NR | No | Yes | NR |
| Hirsutism | NR | NR | No | Yes | NR |
| Other | CAD |