| Literature DB >> 35008410 |
Bent Honoré1, Maja Dam Andersen2,3, Diani Wilken1, Peter Kamper2, Francesco d'Amore2,3, Stephen Hamilton-Dutoit3,4, Maja Ludvigsen2,3.
Abstract
In classic Hodgkin lymphoma (cHL), the tumour microenvironment (TME) is of major pathological relevance. The paucity of neoplastic cells makes it important to study the entire TME when searching for prognostic biomarkers. Cure rates in cHL have improved markedly over the last several decades, but patients with primary refractory disease still show inferior survival. We performed a proteomic comparison of pretreatment tumour tissue from ABVD treatment-refractory versus ABVD treatment-sensitive cHL patients, in order to identify biological differences correlating with treatment outcome. Formalin-fixed paraffin-embedded tumour tissues from 36 patients with cHL, 15 with treatment-refractory disease, and 21 with treatment-sensitive disease, were processed for proteomic investigation. Label-free quantification nano liquid chromatography tandem mass spectrometry was performed on the tissues. A total of 3920 proteins were detected and quantified between the refractory and sensitive groups. This comparison revealed several subtle but significant differences in protein expression which could identify subcluster characteristics of the refractory group. Bioinformatic analysis of the biological differences indicated that a number of pathologically activated signal transduction pathways are disturbed in ABVD treatment-refractory cHL.Entities:
Keywords: Hodgkin lymphoma; prognosis; proteomics; treatment
Year: 2022 PMID: 35008410 PMCID: PMC8750842 DOI: 10.3390/cancers14010247
Source DB: PubMed Journal: Cancers (Basel) ISSN: 2072-6694 Impact factor: 6.639
Baseline clinicopathological characteristics of the study cohort.
| Characteristics |
|
|
| |||
|---|---|---|---|---|---|---|
| No. of Patients | % | No. of Patients | % | No. of Patients | % | |
| 36 (15–79) | 32 (15–72) | 36 (17–79) | ||||
| Male | 21 | 58.3 | 8 | 53.3 | 13 | 61.9 |
| Female | 15 | 41.7 | 7 | 46.7 | 8 | 38.1 |
| 0–3 | 29 | 82.9 | 10 | 71.4 | 19 | 90.5 |
| >3 | 6 | 17.1 | 4 | 28.6 | 2 | 9.5 |
| NS | 31 | 86.1 | 12 | 80.0 | 19 | 90.5 |
| MC | 4 | 11.1 | 2 | 13.3 | 2 | 9.5 |
| LD | 1 | 2.8 | 1 | 6.7 | 0 | 0 |
| No | 16 | 44.4 | 5 | 33.3 | 11 | 52.4 |
| Yes | 20 | 55.6 | 10 | 66.7 | 10 | 47.6 |
| I–II | 20 | 55.6 | 6 | 40.0 | 14 | 66.7 |
| III–IV | 16 | 44.4 | 9 | 60.0 | 7 | 33.3 |
| No | 21 | 61.8 | 5 | 38.5 | 16 | 76.2 |
| Yes | 13 | 38.2 | 8 | 61.5 | 5 | 23.8 |
| ABVD | 29 | 80.6 | 13 | 86.7 | 16 | 76.2 |
| ABVD/COPP | 7 | 19.4 | 2 | 13.3 | 5 | 23.8 |
| ABVD+RT | 16 | 76.2 | 7 | 100.0 | 9 | 64.3 |
| ABVD/COPP+RT | 5 | 23.8 | 0 | 0 | 5 | 35.7 |
Abbreviation: IPS: international prognostic score; NS: nodular sclerosis; MC: mixed cellularity; LD: lymphocyte-depleted; ABVD: doxorubicin, bleomycin, vinblastine, dacarbazine; COPP: cyclophosphamide, oncovin, procarbazine, prednisone; CMT: combined modality treatment; RT: radiotherapy.
Figure 1Differentially expressed proteins based on 1197 proteins detected in all patient samples. Principal component analysis (A) and unsupervised clustering (B) based on 1197 proteins detected in all patient samples. Pink = s, sensitive; Blue = r, refractory. (C) Volcano plot based on the 1197 proteins expressed in all patient tumours comparing the treatment-refractory versus the treatment-sensitive groups (log2 values). The grey horizontal line marks the threshold of p < 0.05 of 79 significantly differentially expressed proteins. Fifteen proteins were differentially expressed at p < 0.01 and 1 protein at p < 0.001. Red: Upregulated. Green: Downregulated. (D) Principal Component Analysis, and (E) unsupervised clustering based on 15 differentially expressed proteins (p < 0.01) in all patient samples. Pink = s, sensitive; Blue = r, refractory.
Figure 2Differentially expressed proteins detected in at least 60% of the analysed samples. (A) Volcano plot of 2473 proteins found in at least 60% of patient samples. The grey horizontal line marks the threshold of p < 0.05 of 145 significantly differentially expressed proteins. Twenty-six proteins were differentially expressed at p < 0.01 and 2 proteins at p < 0.001. Red: Upregulated. Green: Downregulated. (B) Unsupervised clustering based on expression of 2 proteins (p < 0.001). Pink = s, sensitive; Blue = r, refractory.
Canonical pathways based on 1197 proteins identified in all samples.
| Ingenuity Canonical Pathways | −log( | Ratio | z-Score | Molecules |
|---|---|---|---|---|
| α-Adrenergic Signalling | 2.56 | 0.312 | ||
| Phagosome Maturation | 1.99 | 0.184 | ||
| Gαi Signalling | 1.97 | 0.286 | 2 | |
| GNRH Signalling | 1.92 | 0.227 | 1.342 | |
| CCR3 Signalling in Eosinophils | 1.75 | 0.25 | ||
| G Beta Gamma Signalling | 1.66 | 0.235 | 1 | |
| Endocannabinoid Developing Neuron Pathway | 1.66 | 0.235 | ||
| Th1 and Th2 Activation Pathway | 1.57 | 0.222 | ||
| Cardiac Hypertrophy Signalling | 1.54 | 0.185 | 0.447 | |
| Amyloid Processing | 1.5 | 0.273 | ||
| 1.49 | 0.211 | 2 | ||
| P2Y Purigenic Receptor Signalling Pathway | 1.49 | 0.211 | 0 | |
| Phototransduction Pathway | 1.42 | 0.4 | ||
| Regulation of the Epithelial Mesenchymal Transition in Development Pathway | 1.42 | 0.4 | ||
| Role of NFAT in Cardiac Hypertrophy | 1.42 | 0.2 | 0 | |
| Cardiac Hypertrophy Signalling (Enhanced) | 1.41 | 0.154 | 0.816 | |
| Angiopoietin Signalling | 1.4 | 0.25 | ||
| Endocannabinoid Neuronal Synapse Pathway | 1.4 | 0.25 | ||
| Corticotropin Releasing Hormone Signalling | 1.31 | 0.231 |
Figure 3Ingenuity pathway analysis in ABVD refractory and ABVD sensitive patients. Overlapping of the pathways found to be enriched by ingenuity pathway analysis based on 1197 proteins identified. The vast majority of pathways belong to signalling pathways. The proteins involved are listed in Table 2.
Figure 4Box plot of the levels of ten selected proteins, APRC5, CRK, GNAI2, GNAQ, GNB1, RALB, RAB1B, PAK2, PGRMC2, and PRKACB in the ABVD sensitive and refractory group. Label-free quantification (LFQ).