Literature DB >> 3500712

Nucleophilic re-activation of the PC1 beta-lactamase of Staphylococcus aureus and of the DD-peptidase of Streptomyces R61 after their inactivation by cephalosporins and cephamycins.

W S Faraci1, R F Pratt.   

Abstract

It has been shown previously [Faraci & Pratt (1985) Biochemistry 24, 903-910; (1986) Biochemistry 25, 2934-2941; (1986) Biochem. J. 238, 309-312] that certain beta-lactam-processing enzymes form inert acyl-enzymes with cephems that possess good leaving groups at the C-3' position. These inert species arise by elimination of the leaving group from the initially formed and more rapidly hydrolysing acyl-enzyme, which has the 'normal' cephalosporoate structure. The present paper shows that a strong nucleophile, thiophenoxide, can catalyse the re-activation of three examples of these inert acyl-enzymes, generated on reaction of cephalothin and cefoxitin with the PC1 beta-lactamase of Staphylococcus aureus and of cephalothin with D-alanyl-D-alanine transpeptidase/carboxypeptidase of Streptomyces R61. In view of the reversibility of the elimination reaction, demonstrated in model systems [Pratt & Faraci (1986) J. Am. Chem. Soc. 108, 5328-5333], this catalysis is proposed to arise through nucleophilic addition to the exo-methylene carbon atom of the inert acyl-enzyme to regenerate a more rapidly hydrolysing normal cephalosporoate. Strong support for this scenario was obtained through comparison of the kinetics of the catalysed re-activation reaction with those of turnover of the relevant 3'-thiophenoxycephems, thiophenoxycephalothin and thiophenoxycefoxitin. The enzymes appear to stabilize the products of the elimination reaction with respect to the normal cephalosporoate, but more strongly to destabilize the transition states. The effects of other nucleophiles, including cysteine, glycine amide and imidazole, on the above enzymes and on other beta-lactamases can be understood in terms of the model reaction kinetics and thermodynamics.

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Year:  1987        PMID: 3500712      PMCID: PMC1148329          DOI: 10.1042/bj2460651

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  15 in total

Review 1.  Use of model enzymes in the determination of the mode of action of penicillins and delta 3-cephalosporins.

Authors:  J M Ghuysen; J M Frère; M Leyh-Bouille; J Coyette; J Dusart; M Nguyen-Distèche
Journal:  Annu Rev Biochem       Date:  1979       Impact factor: 23.643

2.  Tissue sulfhydryl groups.

Authors:  G L ELLMAN
Journal:  Arch Biochem Biophys       Date:  1959-05       Impact factor: 4.013

3.  Synthesis of 7 alpha-methoxy-7-[2-(substituted thio)acetamido]cephalosporin derivatives and their antibacterial activities.

Authors:  B Shimizu; M Kaneko; M Kimura; S Sugawara
Journal:  Chem Pharm Bull (Tokyo)       Date:  1976-11       Impact factor: 1.645

4.  Mechanism of action of penicillins: a proposal based on their structural similarity to acyl-D-alanyl-D-alanine.

Authors:  D J Tipper; J L Strominger
Journal:  Proc Natl Acad Sci U S A       Date:  1965-10       Impact factor: 11.205

5.  Pre-steady state beta-lactamase kinetics. The trapping of a covalent intermediate and the interpretation of pH rate profiles.

Authors:  E G Anderson; R F Pratt
Journal:  J Biol Chem       Date:  1983-11-10       Impact factor: 5.157

6.  beta-Lactamase proceeds via an acyl-enzyme intermediate. Interaction of the Escherichia coli RTEM enzyme with cefoxitin.

Authors:  J Fisher; J G Belasco; S Khosla; J R Knowles
Journal:  Biochemistry       Date:  1980-06-24       Impact factor: 3.162

7.  beta-Lactamase-catalyzed hydrolysis of acyclic depsipeptides and acyl transfer to specific amino acid acceptors.

Authors:  R F Pratt; C P Govardhan
Journal:  Proc Natl Acad Sci U S A       Date:  1984-03       Impact factor: 11.205

8.  Pre-steady state beta-lactamase kinetics. Observation of a covalent intermediate during turnover of a fluorescent cephalosporin by the beta-lactamase of STaphylococcus aureus PC1.

Authors:  E G Anderson; R F Pratt
Journal:  J Biol Chem       Date:  1981-11-25       Impact factor: 5.157

9.  Electronic structures of cephalosporins and penicillins. 9. Departure of a leaving group in cephalosporins.

Authors:  D B Boyd; W H Lunn
Journal:  J Med Chem       Date:  1979-07       Impact factor: 7.446

10.  Mechanism of inhibition of the PC1 beta-lactamase of Staphylococcus aureus by cephalosporins: importance of the 3'-leaving group.

Authors:  W S Faraci; R F Pratt
Journal:  Biochemistry       Date:  1985-02-12       Impact factor: 3.162

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  5 in total

1.  Crystal structures of covalent complexes of β-lactam antibiotics with Escherichia coli penicillin-binding protein 5: toward an understanding of antibiotic specificity.

Authors:  George Nicola; Joshua Tomberg; R F Pratt; Robert A Nicholas; Christopher Davies
Journal:  Biochemistry       Date:  2010-09-21       Impact factor: 3.162

2.  Effect of the 3'-leaving group on turnover of cephem antibiotics by a class C beta-lactamase.

Authors:  L J Mazzella; R F Pratt
Journal:  Biochem J       Date:  1989-04-01       Impact factor: 3.857

3.  The crystal structures of CDD-1, the intrinsic class D β-lactamase from the pathogenic Gram-positive bacterium Clostridioides difficile, and its complex with cefotaxime.

Authors:  Nichole K Stewart; Clyde A Smith; Marta Toth; Anastasiya Stasyuk; Sergei B Vakulenko
Journal:  J Struct Biol       Date:  2019-09-21       Impact factor: 2.867

4.  Effect of side-chain amide thionation on turnover of beta-lactam substrates by beta-lactamases. Further evidence on the question of side-chain hydrogen-bonding in catalysis.

Authors:  R F Pratt; R Krishnaraj; H Xu
Journal:  Biochem J       Date:  1992-09-15       Impact factor: 3.857

5.  Detection of an enzyme isomechanism by means of the kinetics of covalent inhibition.

Authors:  S A Adediran; Michael J Morrison; R F Pratt
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2021-06-02       Impact factor: 4.125

  5 in total

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