Literature DB >> 35006671

Protein Engineering in Ribosomally Synthesized and Post-translationally Modified Peptides (RiPPs).

Truc Do, A James Link.   

Abstract

Ribosomally synthesized and post-translationally modified peptides (RiPPs) make up a rapidly growing superfamily of natural products. RiPPs exhibit an extraordinary range of structures, but they all begin as gene-encoded precursor peptides that are linear chains of amino acids produced by ribosomes. Given the gene-encoded nature of RiPP precursor peptides, the toolbox of protein engineering can be directly applied to these precursors. This Perspective will discuss examples of site-directed mutagenesis, noncanonical amino acid mutagenesis, and the construction and screening of combinatorial libraries as applied to RiPPs. These studies have led to important insights into the biosynthesis and bioactivity of RiPPs and the reengineering of RiPPs for entirely new functions.

Entities:  

Year:  2022        PMID: 35006671      PMCID: PMC9454058          DOI: 10.1021/acs.biochem.1c00714

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.321


  57 in total

1.  Plantazolicin, a novel microcin B17/streptolysin S-like natural product from Bacillus amyloliquefaciens FZB42.

Authors:  Romy Scholz; Katie J Molohon; Jonny Nachtigall; Joachim Vater; Andrew L Markley; Roderich D Süssmuth; Douglas A Mitchell; Rainer Borriss
Journal:  J Bacteriol       Date:  2010-10-22       Impact factor: 3.490

Review 2.  Protein engineering of lantibiotics.

Authors:  O P Kuipers; G Bierbaum; B Ottenwälder; H M Dodd; N Horn; J Metzger; T Kupke; V Gnau; R Bongers; P van den Bogaard; H Kosters; H S Rollema; W M de Vos; R J Siezen; G Jung; F Götz; H G Sahl; M J Gasson
Journal:  Antonie Van Leeuwenhoek       Date:  1996-02       Impact factor: 2.271

Review 3.  Lasso peptides: an intriguing class of bacterial natural products.

Authors:  Julian D Hegemann; Marcel Zimmermann; Xiulan Xie; Mohamed A Marahiel
Journal:  Acc Chem Res       Date:  2015-06-16       Impact factor: 22.384

4.  Site-directed and global incorporation of orthogonal and isostructural noncanonical amino acids into the ribosomal lasso peptide capistruin.

Authors:  Rashed S Al Toma; Anja Kuthning; Matthias P Exner; Alexander Denisiuk; Juliane Ziegler; Nediljko Budisa; Roderich D Süssmuth
Journal:  Chembiochem       Date:  2014-12-11       Impact factor: 3.164

5.  Leader Peptide-Free In Vitro Reconstitution of Microviridin Biosynthesis Enables Design of Synthetic Protease-Targeted Libraries.

Authors:  Emmanuel Reyna-González; Bianca Schmid; Daniel Petras; Roderich D Süssmuth; Elke Dittmann
Journal:  Angew Chem Int Ed Engl       Date:  2016-06-23       Impact factor: 15.336

6.  Ribosomally synthesized thiopeptide antibiotics targeting elongation factor Tu.

Authors:  Rowan P Morris; Jennifer A Leeds; Hans Ulrich Naegeli; Lukas Oberer; Klaus Memmert; Eric Weber; Matthew J LaMarche; Christian N Parker; Nathalie Burrer; Stacey Esterow; Andreas E Hein; Esther K Schmitt; Philipp Krastel
Journal:  J Am Chem Soc       Date:  2009-04-29       Impact factor: 15.419

Review 7.  Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature.

Authors:  Paul G Arnison; Mervyn J Bibb; Gabriele Bierbaum; Albert A Bowers; Tim S Bugni; Grzegorz Bulaj; Julio A Camarero; Dominic J Campopiano; Gregory L Challis; Jon Clardy; Paul D Cotter; David J Craik; Michael Dawson; Elke Dittmann; Stefano Donadio; Pieter C Dorrestein; Karl-Dieter Entian; Michael A Fischbach; John S Garavelli; Ulf Göransson; Christian W Gruber; Daniel H Haft; Thomas K Hemscheidt; Christian Hertweck; Colin Hill; Alexander R Horswill; Marcel Jaspars; Wendy L Kelly; Judith P Klinman; Oscar P Kuipers; A James Link; Wen Liu; Mohamed A Marahiel; Douglas A Mitchell; Gert N Moll; Bradley S Moore; Rolf Müller; Satish K Nair; Ingolf F Nes; Gillian E Norris; Baldomero M Olivera; Hiroyasu Onaka; Mark L Patchett; Joern Piel; Martin J T Reaney; Sylvie Rebuffat; R Paul Ross; Hans-Georg Sahl; Eric W Schmidt; Michael E Selsted; Konstantin Severinov; Ben Shen; Kaarina Sivonen; Leif Smith; Torsten Stein; Roderich D Süssmuth; John R Tagg; Gong-Li Tang; Andrew W Truman; John C Vederas; Christopher T Walsh; Jonathan D Walton; Silke C Wenzel; Joanne M Willey; Wilfred A van der Donk
Journal:  Nat Prod Rep       Date:  2013-01       Impact factor: 13.423

Review 8.  New developments in RiPP discovery, enzymology and engineering.

Authors:  Manuel Montalbán-López; Thomas A Scott; Sangeetha Ramesh; Imran R Rahman; Auke J van Heel; Jakob H Viel; Vahe Bandarian; Elke Dittmann; Olga Genilloud; Yuki Goto; María José Grande Burgos; Colin Hill; Seokhee Kim; Jesko Koehnke; John A Latham; A James Link; Beatriz Martínez; Satish K Nair; Yvain Nicolet; Sylvie Rebuffat; Hans-Georg Sahl; Dipti Sareen; Eric W Schmidt; Lutz Schmitt; Konstantin Severinov; Roderich D Süssmuth; Andrew W Truman; Huan Wang; Jing-Ke Weng; Gilles P van Wezel; Qi Zhang; Jin Zhong; Jörn Piel; Douglas A Mitchell; Oscar P Kuipers; Wilfred A van der Donk
Journal:  Nat Prod Rep       Date:  2020-09-16       Impact factor: 15.111

9.  Structural mechanism of transcription inhibition by lasso peptides microcin J25 and capistruin.

Authors:  Nathaniel R Braffman; Frank J Piscotta; Jesse Hauver; Elizabeth A Campbell; A James Link; Seth A Darst
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-09       Impact factor: 11.205

10.  Highly accurate protein structure prediction with AlphaFold.

Authors:  John Jumper; Richard Evans; Alexander Pritzel; Tim Green; Michael Figurnov; Olaf Ronneberger; Kathryn Tunyasuvunakool; Russ Bates; Augustin Žídek; Anna Potapenko; Alex Bridgland; Clemens Meyer; Simon A A Kohl; Andrew J Ballard; Andrew Cowie; Bernardino Romera-Paredes; Stanislav Nikolov; Rishub Jain; Demis Hassabis; Jonas Adler; Trevor Back; Stig Petersen; David Reiman; Ellen Clancy; Michal Zielinski; Martin Steinegger; Michalina Pacholska; Tamas Berghammer; Sebastian Bodenstein; David Silver; Oriol Vinyals; Andrew W Senior; Koray Kavukcuoglu; Pushmeet Kohli
Journal:  Nature       Date:  2021-07-15       Impact factor: 49.962

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