Literature DB >> 35005630

Dysregulation of mitochondrial and proteolysosomal genes in Parkinson's disease myeloid cells.

Elisa Navarro1,2,3,4, Evan Udine1,2,3,4, Katia de Paiva Lopes1,2,3,4, Madison Parks1,2,3,4, Giulietta Riboldi5,6, Brian M Schilder1,2,3,4, Jack Humphrey1,2,3,4, Gijsje J L Snijders7,8, Ricardo A Vialle1,2,3,4, Maojuan Zhuang1,2,3,4, Tamjeed Sikder1,2,9,10, Charalambos Argyrou1,2,3,4, Amanda Allan1,2,3,4, Michael J Chao1,2,3,4, Kurt Farrell1,2,9,10, Brooklyn Henderson5, Sarah Simon4,11, Deborah Raymond4,11, Sonya Elango4,11, Roberto A Ortega4,11, Vicki Shanker4,11, Matthew Swan4,11, Carolyn W Zhu12,13,14, Ritesh Ramdhani15, Ruth H Walker4,16, Winona Tse4, Mary Sano12,13,14, Ana C Pereira1,4, Tim Ahfeldt1,2,4, Alison M Goate1,2,3,4, Susan Bressman4,11, John F Crary1,2,9,10, Lotje de Witte7,8, Steven Frucht5, Rachel Saunders-Pullman4,11, Towfique Raj1,2,3,4.   

Abstract

An increasing number of identified Parkinson's disease (PD) risk loci contain genes highly expressed in innate immune cells, yet their role in pathology is not understood. We hypothesize that PD susceptibility genes modulate disease risk by influencing gene expression within immune cells. To address this, we have generated transcriptomic profiles of monocytes from 230 individuals with sporadic PD and healthy subjects. We observed a dysregulation of mitochondrial and proteasomal pathways. We also generated transcriptomic profiles of primary microglia from brains of 55 subjects and observed discordant transcriptomic signatures of mitochondrial genes in PD monocytes and microglia. We further identified 17 PD susceptibility genes whose expression, relative to each risk allele, is altered in monocytes. These findings reveal widespread transcriptomic alterations in PD monocytes, with some being distinct from microglia, and facilitate efforts to understand the roles of myeloid cells in PD as well as the development of biomarkers.

Entities:  

Year:  2021        PMID: 35005630      PMCID: PMC8728893          DOI: 10.1038/s43587-021-00110-x

Source DB:  PubMed          Journal:  Nat Aging        ISSN: 2662-8465


  92 in total

1.  Deficiencies in complex I subunits of the respiratory chain in Parkinson's disease.

Authors:  Y Mizuno; S Ohta; M Tanaka; S Takamiya; K Suzuki; T Sato; H Oya; T Ozawa; Y Kagawa
Journal:  Biochem Biophys Res Commun       Date:  1989-09-29       Impact factor: 3.575

2.  The Sequence Alignment/Map format and SAMtools.

Authors:  Heng Li; Bob Handsaker; Alec Wysoker; Tim Fennell; Jue Ruan; Nils Homer; Gabor Marth; Goncalo Abecasis; Richard Durbin
Journal:  Bioinformatics       Date:  2009-06-08       Impact factor: 6.937

3.  S100B is increased in Parkinson's disease and ablation protects against MPTP-induced toxicity through the RAGE and TNF-α pathway.

Authors:  Kinnari Sathe; Walter Maetzler; Johannes D Lang; Ross B Mounsey; Corina Fleckenstein; Heather L Martin; Claudia Schulte; Sarah Mustafa; Matthis Synofzik; Zvonimir Vukovic; Shigeyoshi Itohara; Daniela Berg; Peter Teismann
Journal:  Brain       Date:  2012-11       Impact factor: 13.501

4.  Immortalized Parkinson's disease lymphocytes have enhanced mitochondrial respiratory activity.

Authors:  Sarah J Annesley; Sui T Lay; Shawn W De Piazza; Oana Sanislav; Eleanor Hammersley; Claire Y Allan; Lisa M Francione; Minh Q Bui; Zhi-Ping Chen; Kevin R W Ngoei; Flora Tassone; Bruce E Kemp; Elsdon Storey; Andrew Evans; Danuta Z Loesch; Paul R Fisher
Journal:  Dis Model Mech       Date:  2016-09-16       Impact factor: 5.758

5.  Genomics implicates adaptive and innate immunity in Alzheimer's and Parkinson's diseases.

Authors:  Sarah A Gagliano; Jennie G Pouget; John Hardy; Jo Knight; Michael R Barnes; Mina Ryten; Michael E Weale
Journal:  Ann Clin Transl Neurol       Date:  2016-11-04       Impact factor: 4.511

6.  Addressing confounding artifacts in reconstruction of gene co-expression networks.

Authors:  Princy Parsana; Claire Ruberman; Andrew E Jaffe; Michael C Schatz; Alexis Battle; Jeffrey T Leek
Journal:  Genome Biol       Date:  2019-05-16       Impact factor: 13.583

7.  Defining the role of common variation in the genomic and biological architecture of adult human height.

Authors:  Andrew R Wood; Tonu Esko; Jian Yang; Sailaja Vedantam; Tune H Pers; Stefan Gustafsson; Audrey Y Chu; Karol Estrada; Jian'an Luan; Zoltán Kutalik; Najaf Amin; Martin L Buchkovich; Damien C Croteau-Chonka; Felix R Day; Yanan Duan; Tove Fall; Rudolf Fehrmann; Teresa Ferreira; Anne U Jackson; Juha Karjalainen; Ken Sin Lo; Adam E Locke; Reedik Mägi; Evelin Mihailov; Eleonora Porcu; Joshua C Randall; André Scherag; Anna A E Vinkhuyzen; Harm-Jan Westra; Thomas W Winkler; Tsegaselassie Workalemahu; Jing Hua Zhao; Devin Absher; Eva Albrecht; Denise Anderson; Jeffrey Baron; Marian Beekman; Ayse Demirkan; Georg B Ehret; Bjarke Feenstra; Mary F Feitosa; Krista Fischer; Ross M Fraser; Anuj Goel; Jian Gong; Anne E Justice; Stavroula Kanoni; Marcus E Kleber; Kati Kristiansson; Unhee Lim; Vaneet Lotay; Julian C Lui; Massimo Mangino; Irene Mateo Leach; Carolina Medina-Gomez; Michael A Nalls; Dale R Nyholt; Cameron D Palmer; Dorota Pasko; Sonali Pechlivanis; Inga Prokopenko; Janina S Ried; Stephan Ripke; Dmitry Shungin; Alena Stancáková; Rona J Strawbridge; Yun Ju Sung; Toshiko Tanaka; Alexander Teumer; Stella Trompet; Sander W van der Laan; Jessica van Setten; Jana V Van Vliet-Ostaptchouk; Zhaoming Wang; Loïc Yengo; Weihua Zhang; Uzma Afzal; Johan Arnlöv; Gillian M Arscott; Stefania Bandinelli; Amy Barrett; Claire Bellis; Amanda J Bennett; Christian Berne; Matthias Blüher; Jennifer L Bolton; Yvonne Böttcher; Heather A Boyd; Marcel Bruinenberg; Brendan M Buckley; Steven Buyske; Ida H Caspersen; Peter S Chines; Robert Clarke; Simone Claudi-Boehm; Matthew Cooper; E Warwick Daw; Pim A De Jong; Joris Deelen; Graciela Delgado; Josh C Denny; Rosalie Dhonukshe-Rutten; Maria Dimitriou; Alex S F Doney; Marcus Dörr; Niina Eklund; Elodie Eury; Lasse Folkersen; Melissa E Garcia; Frank Geller; Vilmantas Giedraitis; Alan S Go; Harald Grallert; Tanja B Grammer; Jürgen Gräßler; Henrik Grönberg; Lisette C P G M de Groot; Christopher J Groves; Jeffrey Haessler; Per Hall; Toomas Haller; Goran Hallmans; Anke Hannemann; Catharina A Hartman; Maija Hassinen; Caroline Hayward; Nancy L Heard-Costa; Quinta Helmer; Gibran Hemani; Anjali K Henders; Hans L Hillege; Mark A Hlatky; Wolfgang Hoffmann; Per Hoffmann; Oddgeir Holmen; Jeanine J Houwing-Duistermaat; Thomas Illig; Aaron Isaacs; Alan L James; Janina Jeff; Berit Johansen; Åsa Johansson; Jennifer Jolley; Thorhildur Juliusdottir; Juhani Junttila; Abel N Kho; Leena Kinnunen; Norman Klopp; Thomas Kocher; Wolfgang Kratzer; Peter Lichtner; Lars Lind; Jaana Lindström; Stéphane Lobbens; Mattias Lorentzon; Yingchang Lu; Valeriya Lyssenko; Patrik K E Magnusson; Anubha Mahajan; Marc Maillard; Wendy L McArdle; Colin A McKenzie; Stela McLachlan; Paul J McLaren; Cristina Menni; Sigrun Merger; Lili Milani; Alireza Moayyeri; Keri L Monda; Mario A Morken; Gabriele Müller; Martina Müller-Nurasyid; Arthur W Musk; Narisu Narisu; Matthias Nauck; Ilja M Nolte; Markus M Nöthen; Laticia Oozageer; Stefan Pilz; Nigel W Rayner; Frida Renstrom; Neil R Robertson; Lynda M Rose; Ronan Roussel; Serena Sanna; Hubert Scharnagl; Salome Scholtens; Fredrick R Schumacher; Heribert Schunkert; Robert A Scott; Joban Sehmi; Thomas Seufferlein; Jianxin Shi; Karri Silventoinen; Johannes H Smit; Albert Vernon Smith; Joanna Smolonska; Alice V Stanton; Kathleen Stirrups; David J Stott; Heather M Stringham; Johan Sundström; Morris A Swertz; Ann-Christine Syvänen; Bamidele O Tayo; Gudmar Thorleifsson; Jonathan P Tyrer; Suzanne van Dijk; Natasja M van Schoor; Nathalie van der Velde; Diana van Heemst; Floor V A van Oort; Sita H Vermeulen; Niek Verweij; Judith M Vonk; Lindsay L Waite; Melanie Waldenberger; Roman Wennauer; Lynne R Wilkens; Christina Willenborg; Tom Wilsgaard; Mary K Wojczynski; Andrew Wong; Alan F Wright; Qunyuan Zhang; Dominique Arveiler; Stephan J L Bakker; John Beilby; Richard N Bergman; Sven Bergmann; Reiner Biffar; John Blangero; Dorret I Boomsma; Stefan R Bornstein; Pascal Bovet; Paolo Brambilla; Morris J Brown; Harry Campbell; Mark J Caulfield; Aravinda Chakravarti; Rory Collins; Francis S Collins; Dana C Crawford; L Adrienne Cupples; John Danesh; Ulf de Faire; Hester M den Ruijter; Raimund Erbel; Jeanette Erdmann; Johan G Eriksson; Martin Farrall; Ele Ferrannini; Jean Ferrières; Ian Ford; Nita G Forouhi; Terrence Forrester; Ron T Gansevoort; Pablo V Gejman; Christian Gieger; Alain Golay; Omri Gottesman; Vilmundur Gudnason; Ulf Gyllensten; David W Haas; Alistair S Hall; Tamara B Harris; Andrew T Hattersley; Andrew C Heath; Christian Hengstenberg; Andrew A Hicks; Lucia A Hindorff; Aroon D Hingorani; Albert Hofman; G Kees Hovingh; Steve E Humphries; Steven C Hunt; Elina Hypponen; Kevin B Jacobs; Marjo-Riitta Jarvelin; Pekka Jousilahti; Antti M Jula; Jaakko Kaprio; John J P Kastelein; Manfred Kayser; Frank Kee; Sirkka M Keinanen-Kiukaanniemi; Lambertus A Kiemeney; Jaspal S Kooner; Charles Kooperberg; Seppo Koskinen; Peter Kovacs; Aldi T Kraja; Meena Kumari; Johanna Kuusisto; Timo A Lakka; Claudia Langenberg; Loic Le Marchand; Terho Lehtimäki; Sara Lupoli; Pamela A F Madden; Satu Männistö; Paolo Manunta; André Marette; Tara C Matise; Barbara McKnight; Thomas Meitinger; Frans L Moll; Grant W Montgomery; Andrew D Morris; Andrew P Morris; Jeffrey C Murray; Mari Nelis; Claes Ohlsson; Albertine J Oldehinkel; Ken K Ong; Willem H Ouwehand; Gerard Pasterkamp; Annette Peters; Peter P Pramstaller; Jackie F Price; Lu Qi; Olli T Raitakari; Tuomo Rankinen; D C Rao; Treva K Rice; Marylyn Ritchie; Igor Rudan; Veikko Salomaa; Nilesh J Samani; Jouko Saramies; Mark A Sarzynski; Peter E H Schwarz; Sylvain Sebert; Peter Sever; Alan R Shuldiner; Juha Sinisalo; Valgerdur Steinthorsdottir; Ronald P Stolk; Jean-Claude Tardif; Anke Tönjes; Angelo Tremblay; Elena Tremoli; Jarmo Virtamo; Marie-Claude Vohl; Philippe Amouyel; Folkert W Asselbergs; Themistocles L Assimes; Murielle Bochud; Bernhard O Boehm; Eric Boerwinkle; Erwin P Bottinger; Claude Bouchard; Stéphane Cauchi; John C Chambers; Stephen J Chanock; Richard S Cooper; Paul I W de Bakker; George Dedoussis; Luigi Ferrucci; Paul W Franks; Philippe Froguel; Leif C Groop; Christopher A Haiman; Anders Hamsten; M Geoffrey Hayes; Jennie Hui; David J Hunter; Kristian Hveem; J Wouter Jukema; Robert C Kaplan; Mika Kivimaki; Diana Kuh; Markku Laakso; Yongmei Liu; Nicholas G Martin; Winfried März; Mads Melbye; Susanne Moebus; Patricia B Munroe; Inger Njølstad; Ben A Oostra; Colin N A Palmer; Nancy L Pedersen; Markus Perola; Louis Pérusse; Ulrike Peters; Joseph E Powell; Chris Power; Thomas Quertermous; Rainer Rauramaa; Eva Reinmaa; Paul M Ridker; Fernando Rivadeneira; Jerome I Rotter; Timo E Saaristo; Danish Saleheen; David Schlessinger; P Eline Slagboom; Harold Snieder; Tim D Spector; Konstantin Strauch; Michael Stumvoll; Jaakko Tuomilehto; Matti Uusitupa; Pim van der Harst; Henry Völzke; Mark Walker; Nicholas J Wareham; Hugh Watkins; H-Erich Wichmann; James F Wilson; Pieter Zanen; Panos Deloukas; Iris M Heid; Cecilia M Lindgren; Karen L Mohlke; Elizabeth K Speliotes; Unnur Thorsteinsdottir; Inês Barroso; Caroline S Fox; Kari E North; David P Strachan; Jacques S Beckmann; Sonja I Berndt; Michael Boehnke; Ingrid B Borecki; Mark I McCarthy; Andres Metspalu; Kari Stefansson; André G Uitterlinden; Cornelia M van Duijn; Lude Franke; Cristen J Willer; Alkes L Price; Guillaume Lettre; Ruth J F Loos; Michael N Weedon; Erik Ingelsson; Jeffrey R O'Connell; Goncalo R Abecasis; Daniel I Chasman; Michael E Goddard; Peter M Visscher; Joel N Hirschhorn; Timothy M Frayling
Journal:  Nat Genet       Date:  2014-10-05       Impact factor: 38.330

8.  An xQTL map integrates the genetic architecture of the human brain's transcriptome and epigenome.

Authors:  Bernard Ng; Charles C White; Hans-Ulrich Klein; Solveig K Sieberts; Cristin McCabe; Ellis Patrick; Jishu Xu; Lei Yu; Chris Gaiteri; David A Bennett; Sara Mostafavi; Philip L De Jager
Journal:  Nat Neurosci       Date:  2017-09-04       Impact factor: 24.884

9.  Mitochondrial dysfunction and increased glycolysis in prodromal and early Parkinson's blood cells.

Authors:  Amy M Smith; Constanze Depp; Brent J Ryan; Geoffrey I Johnston; Javier Alegre-Abarrategui; Samuel Evetts; Michal Rolinski; Fahd Baig; Claudio Ruffmann; Anna Katharina Simon; Michele T M Hu; Richard Wade-Martins
Journal:  Mov Disord       Date:  2018-10-07       Impact factor: 10.338

10.  Functional architecture of low-frequency variants highlights strength of negative selection across coding and non-coding annotations.

Authors:  Steven Gazal; Po-Ru Loh; Hilary K Finucane; Andrea Ganna; Armin Schoech; Shamil Sunyaev; Alkes L Price
Journal:  Nat Genet       Date:  2018-10-08       Impact factor: 38.330

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  2 in total

1.  Genetic analysis of the human microglial transcriptome across brain regions, aging and disease pathologies.

Authors:  Katia de Paiva Lopes; Gijsje J L Snijders; Jack Humphrey; Lot D de Witte; Towfique Raj; Amanda Allan; Marjolein A M Sneeboer; Elisa Navarro; Brian M Schilder; Ricardo A Vialle; Madison Parks; Roy Missall; Welmoed van Zuiden; Frederieke A J Gigase; Raphael Kübler; Amber Berdenis van Berlekom; Emily M Hicks; Chotima Bӧttcher; Josef Priller; René S Kahn
Journal:  Nat Genet       Date:  2022-01-06       Impact factor: 41.307

2.  Transcriptome deregulation of peripheral monocytes and whole blood in GBA-related Parkinson's disease.

Authors:  Giulietta Maria Riboldi; Ricardo A Vialle; Elisa Navarro; Evan Udine; Katia de Paiva Lopes; Jack Humphrey; Amanda Allan; Madison Parks; Brooklyn Henderson; Kelly Astudillo; Charalambos Argyrou; Maojuan Zhuang; Tamjeed Sikder; J Oriol Narcis; Shilpa Dilip Kumar; William Janssen; Allison Sowa; Giacomo P Comi; Alessio Di Fonzo; John F Crary; Steven J Frucht; Towfique Raj
Journal:  Mol Neurodegener       Date:  2022-08-17       Impact factor: 18.879

  2 in total

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