Literature DB >> 35005326

Multi-omic approaches to acute kidney injury and repair.

Louisa M S Gerhardt1, Andrew P McMahon1.   

Abstract

The kidney has a remarkable regenerative capacity. In response to ischemic or toxic injury, proximal tubule cells can proliferate to rebuild damaged tubules and restore kidney function. However, severe acute kidney injury (AKI) or recurrent AKI events can lead to maladaptive repair and disease progression from AKI to chronic kidney disease (CKD). The application of single cell technologies has identified injured proximal tubule cell states weeks after AKI, distinguished by a pro-inflammatory senescent molecular signature. Epigenetic studies highlighted dynamic changes in the chromatin landscape of the kidney following AKI and described key transcription factors linked to the AKI response. The integration of multi-omic technologies opens new possibilities to improve our understanding of AKI and the driving forces behind the AKI-to-CKD transition, with the ultimate goal of designing tailored diagnostic and therapeutic strategies to improve AKI outcomes and prevent kidney disease progression.

Entities:  

Keywords:  ATAC sequencing; acute kidney injury; epigenomics; multi-omics; single-cell RNA-sequencing

Year:  2021        PMID: 35005326      PMCID: PMC8740908          DOI: 10.1016/j.cobme.2021.100344

Source DB:  PubMed          Journal:  Curr Opin Biomed Eng        ISSN: 2468-4511


  49 in total

1.  Cell-specific translational profiling in acute kidney injury.

Authors:  Jing Liu; A Michaela Krautzberger; Shannan H Sui; Oliver M Hofmann; Ying Chen; Manfred Baetscher; Ivica Grgic; Sanjeev Kumar; Benjamin D Humphreys; Benjamin Humphreys; Winston A Hide; Andrew P McMahon
Journal:  J Clin Invest       Date:  2014-02-24       Impact factor: 14.808

2.  IRF2 transcriptionally induces GSDMD expression for pyroptosis.

Authors:  Nobuhiko Kayagaki; Bettina L Lee; Irma B Stowe; Opher S Kornfeld; Karen O'Rourke; Kathleen M Mirrashidi; Benjamin Haley; Colin Watanabe; Merone Roose-Girma; Zora Modrusan; Sarah Kummerfeld; Rohit Reja; Yafei Zhang; Vicky Cho; T Daniel Andrews; Lucy X Morris; Christopher C Goodnow; Edward M Bertram; Vishva M Dixit
Journal:  Sci Signal       Date:  2019-05-21       Impact factor: 8.192

Review 3.  The Role of Acute Kidney Injury in Chronic Kidney Disease.

Authors:  Raymond K Hsu; Chi-Yuan Hsu
Journal:  Semin Nephrol       Date:  2016-07       Impact factor: 5.299

4.  Acute kidney injury, mortality, length of stay, and costs in hospitalized patients.

Authors:  Glenn M Chertow; Elisabeth Burdick; Melissa Honour; Joseph V Bonventre; David W Bates
Journal:  J Am Soc Nephrol       Date:  2005-09-21       Impact factor: 10.121

Review 5.  Biomarkers and predicting acute kidney injury.

Authors:  Friedrich C Luft
Journal:  Acta Physiol (Oxf)       Date:  2020-05-09       Impact factor: 6.311

6.  Tissue Inhibitor Metalloproteinase-2 (TIMP-2)⋅IGF-Binding Protein-7 (IGFBP7) Levels Are Associated with Adverse Long-Term Outcomes in Patients with AKI.

Authors:  Jay L Koyner; Andrew D Shaw; Lakhmir S Chawla; Eric A J Hoste; Azra Bihorac; Kianoush Kashani; Michael Haase; Jing Shi; John A Kellum
Journal:  J Am Soc Nephrol       Date:  2014-12-22       Impact factor: 10.121

7.  US Renal Data System 2018 Annual Data Report: Epidemiology of Kidney Disease in the United States.

Authors:  Rajiv Saran; Bruce Robinson; Kevin C Abbott; Lawrence Y C Agodoa; Jennifer Bragg-Gresham; Rajesh Balkrishnan; Nicole Bhave; Xue Dietrich; Zhechen Ding; Paul W Eggers; Abduzhappar Gaipov; Daniel Gillen; Debbie Gipson; Haoyu Gu; Paula Guro; Diana Haggerty; Yun Han; Kevin He; William Herman; Michael Heung; Richard A Hirth; Jui-Ting Hsiung; David Hutton; Aya Inoue; Steven J Jacobsen; Yan Jin; Kamyar Kalantar-Zadeh; Alissa Kapke; Carola-Ellen Kleine; Csaba P Kovesdy; William Krueter; Vivian Kurtz; Yiting Li; Sai Liu; Maria V Marroquin; Keith McCullough; Miklos Z Molnar; Zubin Modi; Maria Montez-Rath; Hamid Moradi; Hal Morgenstern; Purna Mukhopadhyay; Brahmajee Nallamothu; Danh V Nguyen; Keith C Norris; Ann M O'Hare; Yoshitsugu Obi; Christina Park; Jeffrey Pearson; Ronald Pisoni; Praveen K Potukuchi; Kaitlyn Repeck; Connie M Rhee; Douglas E Schaubel; Jillian Schrager; David T Selewski; Ruth Shamraj; Sally F Shaw; Jiaxiao M Shi; Monica Shieu; John J Sim; Melissa Soohoo; Diane Steffick; Elani Streja; Keiichi Sumida; Manjula Kurella Tamura; Anca Tilea; Megan Turf; Dongyu Wang; Wenjing Weng; Kenneth J Woodside; April Wyncott; Jie Xiang; Xin Xin; Maggie Yin; Amy S You; Xiaosong Zhang; Hui Zhou; Vahakn Shahinian
Journal:  Am J Kidney Dis       Date:  2019-02-21       Impact factor: 8.860

8.  Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position.

Authors:  Jason D Buenrostro; Paul G Giresi; Lisa C Zaba; Howard Y Chang; William J Greenleaf
Journal:  Nat Methods       Date:  2013-10-06       Impact factor: 28.547

9.  PGC1α drives NAD biosynthesis linking oxidative metabolism to renal protection.

Authors:  Mei T Tran; Zsuzsanna K Zsengeller; Anders H Berg; Eliyahu V Khankin; Manoj K Bhasin; Wondong Kim; Clary B Clish; Isaac E Stillman; S Ananth Karumanchi; Eugene P Rhee; Samir M Parikh
Journal:  Nature       Date:  2016-03-16       Impact factor: 49.962

10.  Molecular characterization of the transition from acute to chronic kidney injury following ischemia/reperfusion.

Authors:  Jing Liu; Sanjeev Kumar; Egor Dolzhenko; Gregory F Alvarado; Jinjin Guo; Can Lu; Yibu Chen; Meng Li; Mark C Dessing; Riana K Parvez; Pietro E Cippà; A Michaela Krautzberger; Gohar Saribekyan; Andrew D Smith; Andrew P McMahon
Journal:  JCI Insight       Date:  2017-09-21
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