| Literature DB >> 35002441 |
Sabah Ghasan Abood Al-Ashoor1, Vasudevan Ramachandran2, Liyana Najwa Inche Mat1,3, Nur Afiqah Mohamad1, Mohd Hazmi Mohamed4,3, Wan Aliaa Wan Sulaiman1,2,3.
Abstract
BACKGROUND: Type 2 Diabetes mellitus (T2DM) is a chronic metabolic disorder. It is a major non-communicable disease affecting 463 million people globally in 2019 and is expected to be double to about 700 million by 2045. The majority are Asians with Indian ethnicity in Malaysia reported as the highest prevalence of T2DM. Cardiovascular disease, renal failure, blindness and neuropathy, as well as premature death are the known morbidity and mortality resulted from T2DM. T2DM is characterized by the dysfunctional insulin physiology that causes reduction of glucose transport into the cells which lead to hyperglycaemia. Hence, one of the important treatments is an oral antidiabetic drug that lowers the serum glucose level in patients with T2DM. This drug will be transported across cell membranes by organic cation transporters (OCT). Therefore, it is important to identify the OCT candidate gene polymorphisms related to T2DM especially among the Indian ethnicity in Malaysia.Entities:
Keywords: Indian ethnicity; OCT polymorphisms; Organic cation transporter; Type 2 diabetes mellitus
Year: 2021 PMID: 35002441 PMCID: PMC8716931 DOI: 10.1016/j.sjbs.2021.09.008
Source DB: PubMed Journal: Saudi J Biol Sci ISSN: 2213-7106 Impact factor: 4.219
Clinical and biochemical parameters of study subjects.
| Total | 49.83 ± 13.68 | 46.65 ± 14.20 | 0.069 | |
| ≤45 years | 47 (35.6) | 61 (45.9) | ||
| >45 years | 85 (64.4) | 72 (54.1) | 0.089 | |
| Male | 84 (63.6) | 71 (53.4) | ||
| Female | 48 (36.4) | 62 (46.6) | 0.09 | |
| 27.83 ± 4.72 | 27.70 ± 4.96 | 0.625 | ||
| FBS(mmol/L) | 7.84 ± 3.00 | 7.47 ± 2.64 | 0.669 | |
| HbA1C | 7.84 ± 6.61 | 8.26 ± 1.89 |
Data are presented as mean ± SD and data reported as number (percentage) of subjects for gender; BMI = body mass index, FBS = fasting blood sugar, HbA1C = glycated haemoglobin
*Significant P-value, P < 0.05
Mann-Whitney U test
Student’s t-test
Pearson chi-square test
Fig. 1A: PCR-RFLP product for OCT1 (rs628031) gene polymorphism (Lane M: 100 bp ladder; Lane 1-lane 5, 8, 10, 13 and 14: WT, 422 bp; Lane 7,9,11,12, and 13: HT, 422 bp, 268 bp and 154 bp; Lane 6: MT, 268 bp and 154 bp). B: PCR-RFLP product for OCT3 (rs3088442) gene polymorphism (Lane L: 100 bp ladder; Lane 1–5 and 7: WT, 104 bp and 57 bp; Lane 10, 14 and 15: HT, 171 bp, 104 bp and 67 bp; Lane 6, 8, 9, 11 and 16: MT, 171 bp). C: PCR-RFLP product for OCT2 (rs145450955) gene polymorphism (Lane L: 100 bp ladder, Lane 3: WT, 331 bp; Lane 13: HT, 331 bp, 218 bp and 113 bp; Lane 1,2,4–12, and 14: MT, 218 bp and 113 bp). D: PCR-RFLP product for OCT3 (rs2292334) gene polymorphism (Lane L: 100 bp ladder; Lane 2, 6–10: WT, 237 bp and 70 bp; Lane 1, and 3, HT, 307 bp, 237 bp and 70 bp; Lane 4 and 5: MT, 307 bp).
Genotypic and allelic distributions of SLC22A1 rs628031, SLC22A2 rs145450955, SLC22A3 rs3088442 and SLC22A3 rs2292334 gene polymorphisms between T2DM and control subjects.
| SNPs | Genotypes (%) | Alleles (%) | Odd ratio | |||||
|---|---|---|---|---|---|---|---|---|
| rs628031 T2DM | AA | AG | GG | A | G | |||
| rs145450955 T2DM | CC | CT | TT | C | T | |||
| rs3088442 | GG | GA | AA | G | A | |||
| rs2292334 | GG | GA | AA | G | A | |||
| rs628031 T2DM | AA | AG | GG | A | G | |||
| rs145450955 T2DM | CC | CT | TT | C | T | |||
| rs3088442 | GG | GA | AA | G | A | |||
| rs2292334 | GG | GA | AA | G | A | |||
SNPs = single nucleotide polymorphisms, T2DM = type 2 diabetes mellitus, CI = confidence interval.
*Significant P-value, P < 0.05.
Pearson Chi-square test.
Genotypes association based on genetic models.
| OR (95% CI) for diabetics | ||||||
|---|---|---|---|---|---|---|
| Gene variant | Additive | Dominant | Recessive | p† | p‡ | p§ |
| rs628031 | 1.49 (0.55–4.06) | 1.37 (0.84–2.26) | 1.34 (0.50–3.56) | 0.428 | 0.212 | 0.56 |
| rs145450955 | 1.29 (0.75–2.24) | 1.28 (0.78–2.11) | 1.25 (0.73–2.12) | 0.359 | 0.335 | 0.419 |
| rs3088442 | 1.09 (0.61–1.96) | 1.11 (0.67–1.85) | 1.07 (0.60–1.89) | 0.772 | 0.685 | 0.824 |
| rs2292334 | 1.56 (0.84–2.91) | 1.61 (0.95–2.73) | 1.43 (0.78–2.64) | 0.163 | 0.075 | 0.249 |
| rs628031 | 2.26 (0.55–9.34) | 1.39 (0.73–2.62) | 2.05 (0.51–8.23) | 0.258 | 0.313 | 0.314 |
| rs145450955 | 1.27 (0.63–2.53) | 1.31 (0.69–2.47) | 1.18 (0.61–2.31) | 0.506 | 0.404 | 0.625 |
| rs3088442 | 1.56 (0.72–3.35) | 1.53 (0.79–2.97) | 1.45 (0.69–3.07) | 0.259 | 0.207 | 0.328 |
| rs2292334 | 2.17 (0.96–4.90) | 2.04 (1.01–4.10) | 2.02 (0.90–4.49) | 0.062 | 0.046 | 0.087 |
OR = odds ratio, CI = confidence interval.
p†, for the additive model; p‡, for the dominant model; and p§, for the recessive model.
†‡§ Logistic regression analysis
Genotypes associations based on genetic models and genders.
| OR (95% CI) | ||||||||
|---|---|---|---|---|---|---|---|---|
| Age | Gender | Gene Variant | Additive | Dominant | Rececssive | p† | p‡ | p§ |
| rs628031 | 1.97 (0.50–7.71) | 1.77 (0.90–3.48) | 1.37 (0.37–5.06) | 0.332 | 0.756 | 0.633 | ||
| rs145450955 | 1.03 (0.49–2.18) | 1.05 (0.54–2.04) | 1.12 (0.56–2.22) | 0.937 | 0.885 | 0.755 | ||
| rs3088442 | 0.81 (0.37–1.77) | 0.81 (0.40–1.66) | 0.94 (0.45–1.96) | 0.6 | 0.569 | 0.866 | ||
| rs2292334 | 3.11 (1.25–7.73) | 2.91 (1.37–6.19) | 2.92 (1.21–7.08) | 0.014 | 0.006* | 0.018 | ||
| rs628031 | 0.69 (0.11–4.11) | 0.83 (0.36–1.89) | 1.09 (0.21–5.67) | 0.679 | 0.658 | 0.917 | ||
| rs145450955 | 1.78 (0.70–4.51) | 1.99 (0.86–4.63) | 1.56 (0.63–3.84) | 0.224 | 0.107 | 0.338 | ||
| rs3088442 | 1.57 (0.54–4.55) | 1.43 (0.63–3.22) | 1.22 (0.45–3.31) | 0.407 | 0.392 | 0.703 | ||
| rs2292334 | 0.53 (0.18–1.52) | 0.70 (0.31–1.61) | 0.55 (0.19–1.50) | 0.237 | 0.401 | 0.241 | ||
| rs628031 | 1.45 (0.29–7.13) | 1.91 (0.84–4.31) | 1.07 (0.23–5.07) | 0.651 | 0.121 | 0.930 | ||
| rs145450955 | 1.13 (0.45–2.83) | 1.09 (0.49–2.48) | 1.11 (0.47–2.63) | 0.799 | 0.826 | 0.808 | ||
| rs3088442 | 1.69 (0.66–4.29) | 1.82 (0.76–4.33) | 1.55 (0.62–3.88) | 0.273 | 0.178 | 0.353 | ||
| rs2292334 | 3.30 (1.09–10.1) | 2.69 (1.04–6.93) | 3.14 (1.04–9.47) | 0.035 | 0.040 | 0.042 | ||
| rs628031 | NA | 0.73 (0.25–2.12) | NA | NA | 0.565 | NA | ||
| rs145450955 | 1.28 (0.43–3.86) | 1.49 (0.51–4.41) | 1.15 (0.39–3.45) | 0.659 | 0.462 | 0.797 | ||
| rs3088442 | 1.25 (0.32–4.91) | 1.22 (0.42–3.50) | 1.19 (0.32–4.45) | 0.748 | 0.713 | 0.795 | ||
| rs2292334 | 1.23 (0.34–4.37) | 1.43 (0.48–4.19) | 1.11 (0.32–3.84) | 0.752 | 0.520 | 0.872 | ||
OR = odds ratio, CI = confidence interval, NA = not available.
p†, for the additive model; p‡, for the dominant model; and p§, for the recessive model.
*Significant P-value, P < 0.01 after Bonferroni correction (0.05/4 for 4 variants).
†‡§ Logistic regression analysis, adjusted for age.
Allele frequency distribution of OCT gene polymorphisms.
| SNPs | Population | Case/control | Alleles in cases | Alleles in controls | Reference | |||
|---|---|---|---|---|---|---|---|---|
| G | A | G | A | |||||
| China | 153/124 | 0.72 | 0.28 | 0.74 | 0.26 | * | ||
| Indonesia | 86/NA | 0.61 | 0.39 | NA | NA | NS | ||
| Saudi Arabia | 201/89 | 0.69 | 0.31 | 0.71 | 0.29 | NS | ||
| Latvia | 53/193 | 0.27 | 0.73 | 0.24 | 0.76 | * | ||
| Iran | 63/77 | 0.32 | 0.68 | 0.33 | 0.66 | NS | ||
| Present study | 132/133 | 0.27 | 0.73 | 0.22 | 0.78 | NS | ||
| Iran | 40/NA | 0.8 | 0.2 | NA | NA | * | ||
| Present study | 132/133 | 0.6 | 0.4 | 0.67 | 0.33 | NS | ||
| Iran | 150/152 | NR | NR | NR | NR | ** | ||
| Pakistan | 600/300 | 0.67 | 0.33 | 0.54 | 0.46 | ** | ||
| Present study | 132/133 | 0.69 | 0.31 | 0.31 | 0.29 | NS | ||
| G | A | G | A | |||||
| Iran | 150/152 | 0.65 | 0.35 | 0.75 | 0.25 | * | ||
| Present study | 132/133 | 0.69 | 0.31 | 0.77 | 0.23 | NS | ||
NA, not available; NR, not reported; NS, not significant; *(p < 0.05); **(P < 0.001).