Literature DB >> 35001812

Construction and validation of the diagnostic model of keloid based on weighted gene co-expression network analysis (WGCNA) and differential expression analysis.

Jiaheng Xie1, Xiang Zhang2, Kai Zhang3, Chuyan Wu4, Gang Yao1, Jingping Shi1, Liang Chen5, Yiming Hu6, Dan Wu7, Guoyong Yin8, Ming Wang1.   

Abstract

Keloid is a disease that seriously affects the aesthetic appearance of the body. In contrast to normal skin or hypertrophic scars, keloid tissue extends beyond the initial site of injury. Patients may complain of pain, itching, or burning. Although multiple treatments exist, none is uniformly successful. Genetic advances have made it possible to explore differences in gene expression between keloids and normal skin. Identifying the biomarker for keloid is beneficial to the mechanism exploration and treatment development of keloid. In this study, we identified seven genes with significant differences in keloids through weighted gene co-expression network analysis(WGCNA) and differential expression analysis. Then, by the Lasso regression, we constructed a keloid diagnostic model using five of these genes. Further studies found that keloids could be divided into high-risk and low-risk groups by this model, with differences in immunity, m6A methylation, and pyroptosis. Finally, we verified the accuracy of the diagnostic model in clinical RNA-sequencing data.

Entities:  

Keywords:  Keloid; RNA-sequencing; diagnostic model; differential expression analysis; weighted gene co-expression network analysis

Year:  2022        PMID: 35001812     DOI: 10.1080/2000656X.2021.2024557

Source DB:  PubMed          Journal:  J Plast Surg Hand Surg        ISSN: 2000-6764


  3 in total

1.  Response: Commentary: Single-Cell Sequencing Analysis and Weighted CoExpression Network Analysis Based on Public Databases Identified That TNC Is a Novel Biomarker for Keloid.

Authors:  Jiaheng Xie; Yuan Cao; Liang Chen; Ming Wang
Journal:  Front Immunol       Date:  2022-06-28       Impact factor: 8.786

2.  SPINDOC is Highly Expressed in Pan-Cancer Samples and Can Promote the Proliferation, Invasion and Migration of Hepatocellular Carcinoma Cells by Activating Wnt/β-Catenin Signaling Pathway.

Authors:  Wangxia Tong; Lilan Yang; Li Liu; Xudong Liu; Ning Luo
Journal:  Onco Targets Ther       Date:  2022-05-18       Impact factor: 4.345

3.  The m6A-methylated mRNA pattern and the activation of the Wnt signaling pathway under the hyper-m6A-modifying condition in the keloid.

Authors:  Can-Xiang Lin; Zhi-Jing Chen; Qi-Lin Peng; Ke-Rong Xiang; Du-Qing Xiao; Ruo-Xi Chen; Taixing Cui; Yue-Sheng Huang; Hong-Wei Liu
Journal:  Front Cell Dev Biol       Date:  2022-10-03
  3 in total

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