| Literature DB >> 34999848 |
Sjoerd Euser1, Sem Aronson1,2, Irene Manders1,3, Steven van Lelyveld2, Bjorn Herpers1, Jan Sinnige1, Jayant Kalpoe1, Claudia van Gemeren4, Dominic Snijders5, Ruud Jansen1, Sophie Schuurmans Stekhoven2, Marlies van Houten6, Ivar Lede7, James Cohen Stuart8, Fred Slijkerman Megelink9, Erik Kapteijns10, Jeroen den Boer1, Elisabeth Sanders11,12, Alex Wagemakers1, Dennis Souverein1.
Abstract
BACKGROUND: Describing the SARS-CoV-2 viral-load distribution in different patient groups and age categories.Entities:
Keywords: COVID-19; SARS-CoV-2; age; viral-load distribution
Mesh:
Year: 2021 PMID: 34999848 PMCID: PMC8499942 DOI: 10.1093/ije/dyab145
Source DB: PubMed Journal: Int J Epidemiol ISSN: 0300-5771 Impact factor: 9.685
Figure 1Geographical distribution of the total number of SARS-CoV-2 PCR-positive unique patients (n = 25 374) tested in the Regional Public Health Laboratory Kennemerland for the period of January to December 2020.
Data are presented for Public Health Services areas; darker colours represent higher numbers of patients. The majority of patients lived relatively close to the laboratory, located in the red-coloured area.
Crossing-point (Cp)-value characteristics for different patient populations in the first (January–July) and second (August–December) waves
| Patient populations | First wave | Second wave | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| No. tested (%) | No. positive (%) | Cp-value (IQR) | Cp < 20 no. (%) | Cp 20–30 no. (%) | Cp >30no. (%) | No. tested (%) | No. positive (%) | Cp-value (IQR) | Cp <20 no. (%) | Cp 20–30 no. (%) | Cp >30 no. (%) | |
| GP patients | 3290 (5.8) | 252 (7.7) | 28.7 (9.0) | 14 (5.6) | 131 (52.0) | 107 (42.5) | 3286 (1.5) | 394 (12.0) | 25.3 (7.9) | 61 (15.5) | 253 (64.2) | 80 (20.3) |
| Hospital HCW | 1017 (1.8) | 78 (7.7) | 28.7 (8.5) | 4 (5.1) | 43 (55.1) | 31 (39.7) | 2827 (1.3) | 426 (15.1) | 25.0 (5.9) | 18 (4.2) | 339 (79.6) | 69 (16.2) |
| Hospital patients (admitted) | 903 (1.6) | 42 (4.7) | 32.5 (8.7) | 3 (7.1) | 12 (28.6) | 27 (64.3) | 680 (0.3) | 65 (9.6) | 26.0 (11.0) | 10 (15.4) | 33 (50.8) | 22 (33.8) |
| Hospital patients (not admitted) | 14 165 (25.0) | 1176 (8.3) | 29.2 (7.6) | 55 (4.7) | 616 (52.4) | 505 (42.9) | 1196 (0.5) | 128 (10.7) | 27.2 (8.8) | 21 (16.4) | 65 (50.8) | 42 (32.8) |
| Nursing-home HCWs | 1432 (2.5) | 175 (12.2) | 29.0 (6.5) | 1 (0.6) | 102 (58.3) | 72 (41.1) | 14 131 (6.4) | 1795 (12.7) | 25.6 (6.9) | 106 (5.9) | 1321 (73.6) | 368 (20.5) |
| Nursing-home residents | 2124 (3.8) | 478 (22.5) | 27.5 (7.7) | 34 (7.1) | 295 (61.7) | 149 (31.2) | 4621 (2.1) | 797 (17.2) | 25.0 (8.0) | 96 (12.0) | 510 (64.0) | 191 (24.0) |
| Other | 1266 (2.2) | 125 (9.9) | 27.8 (6.9) | 10 (8.0) | 75 (60.0) | 40 (32.0) | 15 603 (7.0) | 1153 (7.4) | 26.2 (8.3) | 98 (8.5) | 726 (63.0) | 329 (28.5) |
| Public Health testing | 32 395 (57.2) | 374 (1.2) | 26.2 (7.3) | 11 (2.9) | 262 (70.1) | 101 (27.0) | 17 9519 (80.9) | 17 916 (10.0) | 25.7 (5.8) | 611 (3.4) | 14 232 (79.4) | 3073 (17.2) |
| Total | 56 592 (100.0) | 2700 (4.8) | 28.4(8.1) | 132 (4.9) | 1536 (56.9) | 1032 (38.2) | 221 863 (100.0) | 22 674 (10.2) | 25.7 (6.0) | 1021 (4.5) | 17 479 (77.1) | 4174 (18.4) |
Data are presented as no. (%) or median (IQR). GP, general practitioner; HCW, healthcare worker; IQR, interquartile range.
Figure 2Distribution of SARS-CoV-2 polymerase chain reaction crossing-point (Cp)-values within different patient populations in the first (Panel A, n = 2700) and second (Panel B, n = 22 674) waves of the COVID-19 epidemic in the Kennemerland region and adjacent areas
Each box corresponds to one specific patient population that was routinely tested in the period 1 January to 31 July (Panel A) or 1 August to 1 December (Panel B). Data are presented as box-and-whisker plots with the central box covering the interquartile range with the median Cp-value indicated by the line within the box. The whiskers extend to the minimum and maximum values within 1.5 interquartile ranges of the quartiles; more extreme values are plotted individually. Higher Cp-values indicate lower viral loads, as they describe the number of PCR cycles at which the amplification signal crosses the fluorescence threshold.
Crossing-point (Cp)-value characteristics for different age groups in Public Health patients
| Age groups (years) | Cp-values | |||||
|---|---|---|---|---|---|---|
| No. tested (%) | No. positive (%) | Cp-value (IQR) | Cp <20 no. (%) | Cp 20–30 no. (%) | Cp >30 no. (%) | |
| <12 | 5506 (2.6) | 238 (4.3) | 28.7 (5.0) | 0 (0) | 164 (68.9) | 74 (31.1) |
| 12–17 | 22 344 (10.5) | 1589 (7.1) | 26.9 (5.7) | 33 (2.1) | 1181 (74.3) | 375 (23.6) |
| 18–29 | 47 255 (22.3) | 4372 (9.3) | 26.0 (5.6) | 132 (3.0) | 3424 (78.3) | 816 (18.7) |
| 30–39 | 41 533 (19.6) | 2771 (6.7) | 25.9 (5.7) | 61 (2.2) | 2217 (80.0) | 493 (17.8) |
| 40–49 | 34 958 (16.5) | 3068 (8.8) | 25.5 (5.6) | 92 (3.0) | 2487 (81.1) | 489 (15.9) |
| 50–59 | 30 095 (14.2) | 3466 (11.5) | 25.0 (5.3) | 165 (4.8) | 2829 (81.6) | 472 (13.6) |
| 60–69 | 19 225 (9.1) | 1751 (9.1) | 25.3 (5.8) | 78 (4.5) | 1363 (77.8) | 310 (17.7) |
| 70–79 | 8716 (4.1) | 800 (9.2) | 24.8 (5.9) | 48 (6.0) | 634 (79.2) | 118 (14.8) |
| >79 | 2282 (1.1) | 235 (10.3) | 24.6 (5.4) | 13 (5.5) | 195 (83.0) | 27 (11.5) |
| Total | 211 914 (100.0) | 18 290 (8.6) | 25.7 (5.8) | 622 (3.4) | 14 494 (79.2) | 3174 (17.4) |
Data are presented as no. (%) or median. IQR, interquartile range.
Figure 3Distribution of SARS-CoV-2 polymerase chain reaction crossing-point (Cp)-values within different age groups (n = 18 290) of patients tested in a Public Health setting.
Each colour corresponds to one specific age group that was routinely tested in the period 1 January to 1 December. For each group, the frequency of the reported Cp-values was used to calculate a density score of which the area under the curve sums to 1.