Literature DB >> 34989886

Rational design of a new variant of Reteplase with optimized physicochemical profile and large-scale production in Escherichia coli.

Hooria Seyedhosseini Ghaheh1, Shabnam Sajjadi2, Fatemeh Shafiee1, Ebrahim Barzegari3, Fatemeh Moazen1, Hamid Mir Mohammad Sadeghi4.   

Abstract

Structural engineering of the recombinant thrombolytic drug, Reteplase, and its cost-effective production are important goals in the pharmaceutical industry. In this study, a single-point mutant of the protein was rationally designed and evaluated in terms of physicochemical characteristics, enzymatic activity, as well as large-scale production settings. An accurate homology model of Reteplase was used as the input to appropriate tools to identify the aggregation-prone sites, while considering the structural stability. Selected variants underwent extensive molecular dynamic simulations (total 540 ns) to assess their solvation profile and their thermal stability. The Reteplase-fibrin interaction was investigated by docking. The best variant was expressed in E. coli, and Box-Behnken design was used through response surface methodology to optimize its expression conditions. M72R mutant demonstrated appropriate stability, enhanced enzymatic activity (p < 0.05), and strengthened binding to fibrin, compared to the wild type. The optimal conditions for the variant's production in a bioreactor was shown to be 37 ºC, induction with 0.5 mM IPTG, for 2 h of incubation. Under these conditions, the final amount of the produced enzyme was increased by about 23 mg/L compared to the wild type, with an increase in the enzymatic activity by about 2 IU/mL. This study thus offered a new Reteplase variant with nearly all favorable properties, except solubility. The impact of temperature and incubation time on its large-scale production were underlined as well.
© 2021. The Author(s), under exclusive licence to Springer Nature B.V.

Entities:  

Keywords:  Escherichia coli; Expression optimization; Molecular dynamic simulation; Rational design; Response surface methodology; Reteplase

Mesh:

Substances:

Year:  2022        PMID: 34989886     DOI: 10.1007/s11274-021-03204-1

Source DB:  PubMed          Journal:  World J Microbiol Biotechnol        ISSN: 0959-3993            Impact factor:   3.312


  33 in total

1.  Electrostatics of nanosystems: application to microtubules and the ribosome.

Authors:  N A Baker; D Sept; S Joseph; M J Holst; J A McCammon
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-21       Impact factor: 11.205

2.  Effect of temperature on protein quality in bacterial inclusion bodies.

Authors:  Natalia Sánchez de Groot; Salvador Ventura
Journal:  FEBS Lett       Date:  2006-11-10       Impact factor: 4.124

3.  Enhancing the stability and solubility of TEV protease using in silico design.

Authors:  Lisa D Cabrita; Dimitri Gilis; Amy L Robertson; Yves Dehouck; Marianne Rooman; Stephen P Bottomley
Journal:  Protein Sci       Date:  2007-09-28       Impact factor: 6.725

Review 4.  Response surface methodology (RSM) as a tool for optimization in analytical chemistry.

Authors:  Marcos Almeida Bezerra; Ricardo Erthal Santelli; Eliane Padua Oliveira; Leonardo Silveira Villar; Luciane Amélia Escaleira
Journal:  Talanta       Date:  2008-05-21       Impact factor: 6.057

5.  VERIFY3D: assessment of protein models with three-dimensional profiles.

Authors:  D Eisenberg; R Lüthy; J U Bowie
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

6.  Combining Structural Aggregation Propensity and Stability Predictions To Redesign Protein Solubility.

Authors:  Marcos Gil-Garcia; Manuel Bañó-Polo; Nathalia Varejão; Michal Jamroz; Aleksander Kuriata; Marta Díaz-Caballero; Jara Lascorz; Bertrand Morel; Susanna Navarro; David Reverter; Sebastian Kmiecik; Salvador Ventura
Journal:  Mol Pharm       Date:  2018-08-06       Impact factor: 4.939

Review 7.  Making a case for the right '-ase' in acute ischemic stroke: alteplase, tenecteplase, and reteplase.

Authors:  Katleen Wyatt Chester; Megan Corrigan; J Megan Schoeffler; Michelle Shah; Florence Toy; Barbara Purdon; George M Dillon
Journal:  Expert Opin Drug Saf       Date:  2019-02       Impact factor: 4.250

Review 8.  Advances in recombinant protein expression for use in pharmaceutical research.

Authors:  Rene Assenberg; Paul T Wan; Sabine Geisse; Lorenz M Mayr
Journal:  Curr Opin Struct Biol       Date:  2013-06-01       Impact factor: 6.809

9.  Improving the solubility, activity, and stability of reteplase using in silico design of new variants.

Authors:  Hooria Seyedhosseini Ghaheh; Mohamad Reza Ganjalikhany; Parichehreh Yaghmaei; Morteza Pourfarzam; Hamid Mir Mohammad Sadeghi
Journal:  Res Pharm Sci       Date:  2019-08

10.  Effect of buffer additives on solubilization and refolding of reteplase inclusion bodies.

Authors:  Iman Esmaili; Hamid Mir Mohammad Sadeghi; Vajihe Akbari
Journal:  Res Pharm Sci       Date:  2018-10
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