| Literature DB >> 34987538 |
Oluwaseyi Samuel Olanrewaju1,2, Olaniyi Oyatomi2, Olubukola Oluranti Babalola1, Michael Abberton2.
Abstract
Bambara groundnut (BGN) is a drought-tolerant crop majorly cultivated in sub-Saharan Africa. Due to a lack of extensive research, marginalization, lack of awareness, and lack of available fund among others, this crop's improvement has been limited. The development of this crop depends on evaluation and selection of unique and stable breeding lines in different environments. This study aims to estimate genetic diversity using morphological traits at different locations in 95 accessions of BGN collected from the Genebank of the International Institute of Tropical Agriculture (IITA), Ibadan. The experiment was carried out in three replicates at IITA experimental sites in two agroecological zones in Ibadan (7°40'19.62″ N, 3°91'73.13″ E) and Ikenne (6°51'00.873″ N, 3°41'48.528″ E) using a randomized complete block design. Ten vegetative growth traits and eight yield traits were scored. The data was subjected to ANOVA, PCA, correlation, and cluster analysis. Estimations of genetic parameters and broad sense heritability were carried out on the traits. ANOVA revealed significant variation in each trait except for days to emergence. Significant variation was also observed for accession and location interactions (genotype x environment interactions) for plant height, leaf length, leaf width, chlorophyll content, number of petioles, germination count, number of pods, number of seeds, seed length, seed width, and yield. PC1 and PC2 show 42.3% of the total variations observed by the PC, with seed thickness contributing more to PC1 and the number of seeds contributing more to PC2. Cluster analysis categorized the accessions into four distinct groups. The number of pods had the highest genotypic coefficient of variation of 32.55% and the phenotypic coefficient of variation of 97.61%, while seed length (0.63), seed width (0.54), and seed thickness (0.58) have high heritability values. The genetic advance was highest in yield (76.15%) and lowest in days to 50% germination (0.21%). This study can be used to predict appropriate agroecological zones for the planting of BGN while the knowledge of the diversity of the accessions based on the traits could serve a guide in selecting the best trait for the improvement of the crop.Entities:
Keywords: Bambara groundnut; food security; genetic diversity; genotype by environment interaction; heritability; multivariate analysis; underutilized legumes
Year: 2021 PMID: 34987538 PMCID: PMC8721115 DOI: 10.3389/fpls.2021.796352
Source DB: PubMed Journal: Front Plant Sci ISSN: 1664-462X Impact factor: 5.753
Monthly mean meteorological data of the experimental sites during Bambara groundnut (BGN) growing season (average of 2018–2019 and 2019–2020 crop season).
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| Ibadan | 2018/2019 | Average temperature (°C) | 25 | 25 | 25 | 30 | 30 | 29 |
| Average precipitation (mm) | 94.8 | 99.2 | 53.5 | 3.3 | 0 | 37.6 | ||
| Average relative humidity (%) | 85 | 87 | 86 | 69 | 53 | 62 | ||
| 2019/2020 | Average temperature (°C) | 26 | 26 | 26 | 28 | 29 | 29 | |
| Average precipitation (mm) | 266.7 | 319.8 | 661 | 69.8 | 1.3 | 0.9 | ||
| Average relative humidity (%) | 82 | 83 | 85 | 77 | 62 | 46 | ||
| Ikenne | 2018/2019 | Average temperature (°C) | 26 | 26 | 27 | 28 | 29 | 29 |
| Average precipitation (mm) | 113.2 | 163.9 | 69.3 | 13.3 | 0.6 | 45.1 | ||
| Average relative humidity (%) | 87 | 90 | 87 | 86 | 79 | 82 | ||
| 2019/2020 | Average temperature (°C) | 26 | 26 | 26 | 28 | 28 | 28 | |
| Average precipitation (mm) | 390.3 | 300.9 | 565.8 | 145.4 | 12.7 | 1 | ||
| Average relative humidity (%) | 85 | 88 | 89 | 85 | 83 | 71 |
Figure 1Origin and numbers of accessions from each origin used in this study. (A) the locations of the origin of the accessions on the map, (B) the names of the countries of origin (C) the number of accessions from each country.
Traits scored and their abbreviations.
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| Days to emergence | DTE | Number of days from sowing to seedling emergence |
| Germination Count | GCT | Number of successfully established plants taken at 2 weeks after sowing |
| Days to 50% germination | DT50G | Number of days from sowing to when half of the seeds germinate |
| chlorophyll content | CHLCON | Amount of chlorophyll measured with SPAD meter before sunrise on five healthy plants at 12 weeks |
| Days to 1st Flower | DTF | Number of days from sowing to first flowering |
| Number of petioles/Accession | NPET | Recorded 12 weeks after planting; average count of petioles of five healthy plants. |
| Petiole length/Accession | PEL (cm) | Recorded 12 weeks after planting; average length of three leaves at the fourth node of five healthy plants |
| Plant height/Accession | PH (cm) | Measured from the ground level (at the base of the plant) to the tip of the highest point, including the terminal leaflet. Recorded 12 weeks after planting; average height of five plants |
| Leaf length/Accession | LLE (cm) | Recorded 12 weeks after planting; average length of three leaves at the fourth node of five healthy plants |
| Leaf width/Accession | LWI (cm) | Recorded 12 weeks after planting; average width of three leaves at the fourth node of five healthy plants |
| Number of pods/Accession | NPOD | Average number of 10 plants |
| Number of seeds/Accession | NSEED | Average number of 10 pods recorded within 2 months after harvest |
| Hundred seed weight | HSWT (g) | Recorded within 2 months after harvest (at 12% moisture content) |
| Total seeds weight/Accession | TSWT (g) | Recorded within 2 months after harvest (at 12% moisture content) |
| Seed length | SEEDL (cm) | Recorded within 2 months after harvest; average length of 10 seeds |
| Seed width | SEEDW (cm) | Recorded within 2 months after harvest; average width of 10 seeds |
| Seed thickness | SEEDT (cm) | Recorded within 2 months after harvest; average thickness of 10 seeds |
| Yield/Accession | (kg/ha) | Weight of dried seed (at 12% moisture content) |
Soil properties at the beginning of the experiment for individual locations and seasons.
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| Sand% | 73.67 | 80.33 | 79.33 | 75.00 |
| Clay% | 19.67 | 13.67 | 14.00 | 15.67 |
| Silt% | 6.67 | 6.00 | 6.67 | 9.33 |
| pH | 6.70 | 6.42 | 6.59 | 5.02 |
| % | 0.17 | 0.10 | 0.10 | 0.09 |
| Bray P | 13.45 | 22.48 | 11.27 | 18.89 |
| %OC | 1.02 | 0.41 | 0.44 | 0.41 |
| Ca (cmol/kg) | 1.13 | 3.53 | 1.19 | 3.53 |
| Mg (cmol/kg) | 0.07 | 0.80 | 0.27 | 0.80 |
| K (cmol/kg) | 0.14 | 0.56 | 0.22 | 0.56 |
| Na (cmol/kg) | 0.06 | 0.08 | 0.05 | 0.08 |
| Mn (ppm) | 150.39 | 154.82 | 135.30 | 112.15 |
| Fe (ppm) | 86.22 | 85.84 | 89.46 | 85.58 |
| Cu (ppm) | 0.55 | 1.17 | 0.20 | 1.17 |
| Zn (ppm) | 1.05 | 1.96 | 2.72 | 1.96 |
Summary statistics of the traits scored.
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| DTE | 3 | 13 | 10 | 7.63 | 0.06 | 1.88 | 0.25 |
| DT50G | 6 | 18 | 12 | 11.68 | 0.07 | 2.43 | 0.21 |
| GCT | 2 | 10 | 8 | 8.2 | 0.04 | 1.46 | 0.18 |
| CHLCON | 14.2 | 99.2 | 85 | 39.78 | 0.34 | 11.47 | 0.29 |
| DTF | 28 | 49 | 21 | 38.11 | 0.14 | 4.62 | 0.12 |
| PH | 7.3 | 48.1 | 40.8 | 25.37 | 0.18 | 6.15 | 0.24 |
| LLE | 3.3 | 12.5 | 9.2 | 6.45 | 0.04 | 1.22 | 0.19 |
| LWI | 0.6 | 7.4 | 6.8 | 2.78 | 0.02 | 0.72 | 0.26 |
| PEL | 2.5 | 33.8 | 31.3 | 16.29 | 0.11 | 3.79 | 0.23 |
| NPET | 20 | 280 | 260 | 95.74 | 1.25 | 42.13 | 0.44 |
| NPOD | 0 | 1,133 | 1,133 | 192.68 | 5.33 | 179.93 | 0.93 |
| NSEED | 0 | 1,062 | 1,062 | 184.24 | 4.69 | 158.34 | 0.86 |
| HSWT | 0 | 380 | 380 | 75.47 | 0.8 | 27.12 | 0.36 |
| TSWT | 0 | 771.5 | 771.5 | 153.51 | 3.01 | 101.7 | 0.66 |
| SEEDL | 2.4 | 17.81 | 15.41 | 11.55 | 0.05 | 1.53 | 0.13 |
| SEEDW | 0.34 | 14.58 | 14.24 | 9.17 | 0.03 | 1.14 | 0.12 |
| SEEDT | 0.8 | 14.78 | 13.98 | 9.5 | 0.04 | 1.26 | 0.13 |
| YIELD | 0 | 1266.67 | 1266.67 | 317.12 | 3.7 | 124.97 | 0.39 |
Each trait with its mean, maximum, range, standard error, standard deviation, coefficient of variation, and minimum values shown. Min, Minimum; Max, Maximum; StdError, Standard Error; StdDev, Standard Deviation; CV, coefficient of Variation. *n = 3.
ANOVA result for traits scored.
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| Lctns(L) | 1 | 120.9 | 1.04ns | 7.27 | 8702.0 | 342.04 | 18556.6 | 189,875 | 264.0 | 498.33 | 1709.1 | 549,782 | 1,215,454 | 20,048 | 22,326 | 135.59 | 40.76 | 72.68 | 77,311 |
| Block | 4 | 1019.5 | 26.16 | 7.22 | 147.0 | 9.74 | 212.5 | 17,465 | 7.26 | 194.87 | 16.98 | 1,003,097 | 56,0362 | 812 ns | 224,046 | 4.53 | 5.94 | 3.02 | 57,470 |
| Rep | 2 | 0.5 | 1.70 | 0.65 | 23.4 | 168.94 | 2697.9 | 3,033 | 7.50 | 42.02 | 57.36 | 12,005 | 4,413 | 355 | 8,930 | 0.67 | 0.21 | 0.94 | 27,826 |
| Accns(A) | 94 | 83.0 | 2.12 | 1.14 | 6.4 | 4.17 | 239.9 | 3515 | 3.75 | 26.22 | 6.63 | 50,848 | 35,141 | 1,421 | 11,576 | 9.96 | 4.56 | 6.09 | 28,482 |
| Year(Y) | 1 | 9222.4 | 187.91 | 33.10 | 2528.8 | 0.55ns | 87.0ns | 113,973 | 180.67 | 1172.03 | 4.01ns | 4,597,305 | 3,773,330,440 | 47,969 | 876,694 | 13.84 | 40.85 | 7.14 | 96,718 |
| L | 94 | 23.1 | 1.27 | 0.48 | 4.5ns | 3.74 | 215.1 | 2,231 | 4.14 | 10.21 | 5.76 | 23,977 | 18,538 | 490ns | 6,030ns | 1.82 | 1.04 | 1.10ns | 21,245 |
| L | 1 | 6677.8 | 165.09 | 39.27 | 7490.2 | 0.50 ns | 81.0ns | 108,052 | 166.88 | 1192.74 | 0.03ns | 8,077,471 | 5,127,831 | 16,767 | 1,963,188 | 43.27 | 34.13 | 67.07 | 6532ns |
| A | 94 | 23.2 | 1.30 | 0.41 | 4.2ns | 1.59 ns | 21.07ns | 682ns | 0.62ns | 9.90ns | 1.82ns | 28,598 | 24,255 | 536ns | 7234ns | 1.48ns | 1.02ns | 1.18ns | 8,855ns |
| L | 94 | 18.5 | 1.58 | 0.52 | 5.8 | 1.63ns | 21.6ns | 695ns | 0.52ns | 20.96 | 1.82ns | 22,755 | 19,397 | 690 ns | 7230ns | 1.28ns | 0.8ns | 1.05ns | 14,147ns |
| Res | 754 | 12.0 | 0.87 | 0.32 | 4.0 | 3.0 | 103.7 | 1,146 | 1.23 | 8.42 | 4.441 | 10,284 | 9,927 | 602 | 6,617 | 1.42 | 0.85 | 1.0 | 13,909 |
| GM | 25.39 | 0.82 | 0.44 | 1.58 | 0.87 | 1.6 | 1.94 | 0.9 | 1.23 | 1.06 | 6.81 | 6.89 | 6.21 | 6.78 | 3.52 | 3.18 | 3.23 | 8.26 | |
| LSD | 2.78 | 0.75 | 0.45 | 1.60 | 1.39 | 8.16 | 27.13 | 0.89 | 2.32 | 1.68 | 81.28 | 79.85 | 19.67 | 65.19 | 0.95 | 0.74 | 0.80 | 94.52 |
Trait values indicate the mean square values; Lctns, locations; Accns, accessions; Res, residuals; GM, grandmean; Df, degree of freedom; CHL, chlorophyll content; SL, seed length; SW, seed width; ST, seed thickness; YLD, yield; other traits are as represented in .
Highly significant at p < 0.0001.
Highly significant at p < 0.001.
Highly significant at p < 0.01.
Significant at p < 0.05.
ns, no significance.
Figure 2PC 1 and PC 2 biplot using quantitative trait scores of the Bambara groundnut (BGN) accessions. Each accession is represented according to its origin. Inset is the scree plot showing the explained variances.
Trait contributions, eigenvalues, and cumulative percentage of the components.
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| PH | 3.78 | 9.12 | 10.80 |
| LLE | 0.17 | 4.16 | 10.57 |
| LWI | 4.92 | 2.34 | 11.87 |
| DTE | 0.11 | 3.14 | 5.74 |
| DT50G | 0.01 | 4.53 | 3.55 |
| CHLCON | 0.05 | 3.29 | 0.09 |
| GCT | 1.06 | 3.78 | 1.33 |
| DTF | 0.13 | 0.56 | 21.25 |
| NPET | 0.01 | 2.53 | 3.87 |
| PEL | 1.54 | 8.93 | 14.92 |
| NPOD | 2.33 | 18.48 | 2.93 |
| NSEED | 0.96 | 21.78 | 1.00 |
| HSWT | 16.98 | 0.14 | 3.98 |
| TSWT | 2.75 | 13.96 | 4.96 |
| SEEDL | 15.93 | 0.22 | 0.16 |
| SEEDW | 19.93 | 0.22 | 0.32 |
| SEEDT | 19.58 | 0.13 | 0.34 |
| YIELD | 9.76 | 2.68 | 2.30 |
| Eigenvalue | 4.44 | 3.17 | 2.19 |
| Percentage variance | 24.67 | 17.63 | 12.19 |
| Percentage cumulative variance | 24.67 | 42.3 | 54.49 |
PH, plant height (cm); LLE, leaf length (cm); LWI, leaf width (cm); DTE, days to emergence; DT50G, days to 50% germination; CHLCON, chlorophyll content; GCT, germination count; DTF, days to flowering; NPET, number of petioles; PEL, petiole length (cm); NPOD, number of pods; NSEED, number of seeds; HSWT, hundred seed weight (g); TSWT, total seed weight (g); SEEDL, seed length (cm); SEEDW, seed width (cm); SEEDT, seed thickness (cm), Yield (kg/ha).
Figure 3Hierarchical clustering dendrogram analysis; Euclidean distance was used and the associations between groups were done by the Ward method for morphological traits across the environments.
Figure 4Correlations among the traits scored; Pearson's rank correlation matrix and performance analytic chart of the variables showing the relationship among the variables scored on BGN accessions grown across two locations and years. (Blue color indicates a significant positive correlation and red color indicates a significant negative correlation among different traits. PH, plant height (cm); LLE, leaf length (cm); LWI, leaf width (cm); DTE, days to emergence; DT50G, days to 50% germination; CHLCON, chlorophyll content; GCT, germination count; DTF, days to flowering; NPET, number of petioles; PEL, petiole length (cm); NPOD, number of pods; NSEED, number of seeds; HSWT, hundred seed weight (g); TSWT, total seed weight (g); SEEDL, seed length (cm); SEEDW, seed width (cm); SEEDT, seed thickness (cm), Yield (kg/ha). *Significant, p < 0.05.
Variance components, heritability, and genetic advance for growth and yield traits.
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| PH | 48.56 | 14.21 | 14.86 | 27.47 | 29 | 4.20 | 16.56 |
| LLE | 1.66 | 0.21 | 7.18 | 19.95 | 13 | 0.32 | 5.33 |
| LWI | 0.68 | 0.23 | 16.74 | 29.65 | 32 | 0.54 | 19.48 |
| DTE | 3.48 | 0.31 | 7.33 | 24.47 | 9 | 0.35 | 4.52 |
| DT50G | 6.00 | 0.25 | 4.32 | 20.97 | 4 | 0.21 | 1.83 |
| CHLCON | 159.36 | 42.84 | 16.45 | 31.74 | 27 | 6.99 | 17.57 |
| GCT | 2.58 | 0.61 | 6.50 | 19.61 | 23 | 0.78 | 9.47 |
| DTF | 16.99 | 5.78 | 6.31 | 10.81 | 34 | 2.89 | 7.57 |
| NPET | 2200.51 | 569.26 | 24.92 | 49.00 | 26 | 25.00 | 26.11 |
| PEL | 17.45 | 4.12 | 12.46 | 25.64 | 24 | 2.03 | 12.47 |
| NPOD | 35373.05 | 3932.95 | 32.55 | 97.61 | 11 | 43.08 | 22.36 |
| NSEED | 26053.10 | 1256.54 | 19.24 | 87.61 | 5 | 16.04 | 8.70 |
| HSWT | 923.32 | 248.87 | 20.90 | 40.26 | 27 | 16.87 | 22.35 |
| TSWT | 9870.43 | 631.61 | 16.37 | 64.72 | 6 | 13.10 | 8.53 |
| SEEDL | 4.41 | 2.77 | 14.41 | 18.19 | 63 | 2.72 | 23.53 |
| SEEDW | 2.19 | 1.18 | 11.84 | 16.13 | 54 | 1.64 | 17.89 |
| SEEDT | 2.81 | 1.64 | 13.48 | 17.66 | 58 | 2.01 | 21.20 |
| YIELD | 19476.39 | 5159.09 | 22.65 | 44.01 | 26 | 76.15 | 24.01 |
V.