Literature DB >> 34986268

Properties of the Reactants and Their Interactions within and with the Enzyme Binding Cavity Determine Reaction Selectivities. The Case of Fe(II)/2-Oxoglutarate Dependent Enzymes.

Zuzanna Wojdyla1, Tomasz Borowski1.   

Abstract

Fe(II)/2-oxoglutarate dependent dioxygenases (ODDs) share a double stranded beta helix (DSBH) fold and utilise a common reactive intermediate, ferryl species, to catalyse oxidative transformations of substrates. Despite the structural similarities, ODDs accept a variety of substrates and facilitate a wide range of reactions, that is hydroxylations, desaturations, (oxa)cyclisations and ring rearrangements. In this review we present and discuss the factors contributing to the observed (regio)selectivities of ODDs. They span from inherent properties of the reactants, that is, substrate molecule and iron cofactor, to the interactions between the substrate and the enzyme's binding cavity; the latter can counterbalance the effect of the former. Based on results of both experimental and computational studies dedicated to ODDs, we also line out the properties of the reactants which promote reaction outcomes other than the "default" hydroxylation. It turns out that the reaction selectivity depends on a delicate balance of interactions between the components of the investigated system.
© 2022 Wiley-VCH GmbH.

Entities:  

Keywords:  2-oxoglutarate; Fe(II); reaction mechanism; regioselectivity; selectivity

Mesh:

Substances:

Year:  2022        PMID: 34986268     DOI: 10.1002/chem.202104106

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  3 in total

1.  Rational Design of the Soluble Variant of l-Pipecolic Acid Hydroxylase using the α-Helix Rule and the Hydropathy Contradiction Rule.

Authors:  Suguru Shinoda; Aoi Itakura; Haruka Sasano; Ryoma Miyake; Hiroshi Kawabata; Yasuhisa Asano
Journal:  ACS Omega       Date:  2022-08-11

2.  Elucidation of divergent desaturation pathways in the formation of vinyl isonitrile and isocyanoacrylate.

Authors:  Wantae Kim; Tzu-Yu Chen; Lide Cha; Grace Zhou; Kristi Xing; Nicholas Koenig Canty; Yan Zhang; Wei-Chen Chang
Journal:  Nat Commun       Date:  2022-09-12       Impact factor: 17.694

3.  Can Second Coordination Sphere and Long-Range Interactions Modulate Hydrogen Atom Transfer in a Non-Heme Fe(II)-Dependent Histone Demethylase?

Authors:  Shobhit S Chaturvedi; Simahudeen Bathir Jaber Sathik Rifayee; Sodiq O Waheed; Jon Wildey; Cait Warner; Christopher J Schofield; Tatyana G Karabencheva-Christova; Christo Z Christov
Journal:  JACS Au       Date:  2022-08-18
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.