Literature DB >> 34985751

Cell-Free Synthesis Strategies to Probe Co-translational Folding of Proteins Within Lipid Membranes.

Nicola J Harris1, Eamonn Reading1, Paula J Booth2.   

Abstract

In order to comprehend the molecular basis of transmembrane protein biogenesis, methods are required that are capable of investigating the co-translational folding of these hydrophobic proteins. Equally, in artificial cell studies, controllable methods are desirable for in situ synthesis of membrane proteins that then direct reactions in the synthetic cell membrane. Here we describe a method that exploits cell-free expression systems and tunable membrane mimetics to facilitate co-translational studies. Alteration of the lipid bilayer composition improves the efficiency of the folding system. The approach also enables membrane transport proteins to be made and inserted into artificial cell platforms such as droplet interface bilayers. Importantly, this gives a new facet to the droplet networks by enabling specific transport of molecules across the synthetic bilayer against a concentration gradient. This method also includes a protocol to pause and restart translation of membrane proteins at specified positions during their co-translational folding. This stop-start strategy provides an avenue to investigate whether the proteins fold in sequence order, or if the correct fold of N-terminal regions is reliant on the synthesis of downstream residues.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Active transport; Artificial cells; Cell-free transcription/translation; In vitro co-translational folding; Lipid bilayers; Membrane proteins; Translation pausing

Mesh:

Substances:

Year:  2022        PMID: 34985751     DOI: 10.1007/978-1-0716-1998-8_17

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  62 in total

1.  Cooperative folding of a polytopic α-helical membrane protein involves a compact N-terminal nucleus and nonnative loops.

Authors:  Wojciech Paslawski; Ove K Lillelund; Julie Veje Kristensen; Nicholas P Schafer; Rosanna P Baker; Sinisa Urban; Daniel E Otzen
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-08       Impact factor: 11.205

2.  A small single-domain protein folds through the same pathway on and off the ribosome.

Authors:  Emily J Guinn; Pengfei Tian; Mia Shin; Robert B Best; Susan Marqusee
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-08       Impact factor: 11.205

3.  Folding and Misfolding of Human Membrane Proteins in Health and Disease: From Single Molecules to Cellular Proteostasis.

Authors:  Justin T Marinko; Hui Huang; Wesley D Penn; John A Capra; Jonathan P Schlebach; Charles R Sanders
Journal:  Chem Rev       Date:  2019-01-04       Impact factor: 60.622

4.  Unfolding free energy of a two-domain transmembrane sugar transport protein.

Authors:  Heather E Findlay; Nicholas G Rutherford; Peter J F Henderson; Paula J Booth
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-11       Impact factor: 11.205

5.  Lipid bilayer composition modulates the unfolding free energy of a knotted α-helical membrane protein.

Authors:  M R Sanders; H E Findlay; P J Booth
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-05       Impact factor: 11.205

Review 6.  Nature and Regulation of Protein Folding on the Ribosome.

Authors:  Christopher A Waudby; Christopher M Dobson; John Christodoulou
Journal:  Trends Biochem Sci       Date:  2019-07-10       Impact factor: 13.807

7.  Relative domain folding and stability of a membrane transport protein.

Authors:  Nicola J Harris; Heather E Findlay; John Simms; Xia Liu; Paula J Booth
Journal:  J Mol Biol       Date:  2014-02-14       Impact factor: 5.469

8.  A strategy for co-translational folding studies of ribosome-bound nascent chain complexes using NMR spectroscopy.

Authors:  Anaïs M E Cassaignau; Hélène M M Launay; Maria-Evangelia Karyadi; Xiaolin Wang; Christopher A Waudby; Annika Deckert; Amy L Robertson; John Christodoulou; Lisa D Cabrita
Journal:  Nat Protoc       Date:  2016-07-28       Impact factor: 13.491

Review 9.  Folding scene investigation: membrane proteins.

Authors:  Paula J Booth; Paul Curnow
Journal:  Curr Opin Struct Biol       Date:  2009-01-20       Impact factor: 6.809

10.  Systematic mapping of free energy landscapes of a growing filamin domain during biosynthesis.

Authors:  Christopher A Waudby; Tomasz Wlodarski; Maria-Evangelia Karyadi; Anaïs M E Cassaignau; Sammy H S Chan; Anne S Wentink; Julian M Schmidt-Engler; Carlo Camilloni; Michele Vendruscolo; Lisa D Cabrita; John Christodoulou
Journal:  Proc Natl Acad Sci U S A       Date:  2018-09-10       Impact factor: 12.779

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