Literature DB >> 34985676

TILDA: Tat/Rev Induced Limiting Dilution Assay.

Cynthia Lungu1, Francesco A Procopio2.   

Abstract

Recently the Tat/rev Induced Limiting Dilution Assay, or TILDA, has been proposed as a possible alternative method to quantify the HIV-1 reservoir. TILDA estimates the frequency of latently infected cells by probing, in a limiting dilution format, the presence or inducibility of tat and rev multiply spliced HIV-1 RNA. In doing so, TILDA reduces overestimation of reservoir size compared to HIV-1 DNA measurements because multiply spliced HIV-1 RNA is less likely to be transcribed from dysfunctional genomes with replication defects. TILDA is easy to perform, requires a very low input number of cells and has a fast turnaround time, making it ideal for use in clinical settings. Here we describe the execution of TILDA with particular emphasis on cell preparation and the limiting dilution scheme.
© 2022. Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  HIV latency; HIV reservoir quantification; Inducible reservoir; TILDA

Mesh:

Substances:

Year:  2022        PMID: 34985676     DOI: 10.1007/978-1-0716-1871-4_24

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  22 in total

1.  Enhanced culture assay for detection and quantitation of latently infected, resting CD4+ T-cells carrying replication-competent virus in HIV-1-infected individuals.

Authors:  Janet D Siliciano; Robert F Siliciano
Journal:  Methods Mol Biol       Date:  2005

2.  Cross-clade ultrasensitive PCR-based assays to measure HIV persistence in large-cohort studies.

Authors:  Claire Vandergeeten; Rémi Fromentin; Esther Merlini; Mariam B Lawani; Sandrina DaFonseca; Wendy Bakeman; Amanda McNulty; Moti Ramgopal; Nelson Michael; Jerome H Kim; Jintanat Ananworanich; Nicolas Chomont
Journal:  J Virol       Date:  2014-08-13       Impact factor: 5.103

Review 3.  Total HIV-1 DNA, a Marker of Viral Reservoir Dynamics with Clinical Implications.

Authors:  Véronique Avettand-Fènoël; Laurent Hocqueloux; Jade Ghosn; Antoine Cheret; Pierre Frange; Adeline Melard; Jean-Paul Viard; Christine Rouzioux
Journal:  Clin Microbiol Rev       Date:  2016-10       Impact factor: 26.132

4.  Measuring the Frequency of Latent HIV-1 in Resting CD4⁺ T Cells Using a Limiting Dilution Coculture Assay.

Authors:  Gregory M Laird; Daniel I S Rosenbloom; Jun Lai; Robert F Siliciano; Janet D Siliciano
Journal:  Methods Mol Biol       Date:  2016

5.  Quantification of HIV DNA Using Droplet Digital PCR Techniques.

Authors:  Elizabeth M Anderson; Frank Maldarelli
Journal:  Curr Protoc Microbiol       Date:  2018-09-25

6.  Assessing intra-lab precision and inter-lab repeatability of outgrowth assays of HIV-1 latent reservoir size.

Authors:  Daniel I S Rosenbloom; Peter Bacchetti; Mars Stone; Xutao Deng; Ronald J Bosch; Douglas D Richman; Janet D Siliciano; John W Mellors; Steven G Deeks; Roger G Ptak; Rebecca Hoh; Sheila M Keating; Melanie Dimapasoc; Marta Massanella; Jun Lai; Michele D Sobolewski; Deanna A Kulpa; Michael P Busch
Journal:  PLoS Comput Biol       Date:  2019-04-12       Impact factor: 4.475

Review 7.  New Frontiers in Measuring and Characterizing the HIV Reservoir.

Authors:  Shane D Falcinelli; Cristina Ceriani; David M Margolis; Nancie M Archin
Journal:  Front Microbiol       Date:  2019-12-18       Impact factor: 5.640

8.  Replication-competent noninduced proviruses in the latent reservoir increase barrier to HIV-1 cure.

Authors:  Ya-Chi Ho; Liang Shan; Nina N Hosmane; Jeffrey Wang; Sarah B Laskey; Daniel I S Rosenbloom; Jun Lai; Joel N Blankson; Janet D Siliciano; Robert F Siliciano
Journal:  Cell       Date:  2013-10-24       Impact factor: 41.582

Review 9.  Cell-associated HIV RNA: a dynamic biomarker of viral persistence.

Authors:  Alexander O Pasternak; Vladimir V Lukashov; Ben Berkhout
Journal:  Retrovirology       Date:  2013-04-15       Impact factor: 4.602

10.  Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.

Authors:  Susanne Eriksson; Erin H Graf; Viktor Dahl; Matthew C Strain; Steven A Yukl; Elena S Lysenko; Ronald J Bosch; Jun Lai; Stanley Chioma; Fatemeh Emad; Mohamed Abdel-Mohsen; Rebecca Hoh; Frederick Hecht; Peter Hunt; Ma Somsouk; Joseph Wong; Rowena Johnston; Robert F Siliciano; Douglas D Richman; Una O'Doherty; Sarah Palmer; Steven G Deeks; Janet D Siliciano
Journal:  PLoS Pathog       Date:  2013-02-14       Impact factor: 6.823

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