Saranshu Singla1, K Zin Htut1, Runyao Zhu1, Amara Davis2, Jiayang Ma1, Qing Zhe Ni3, Michael D Burkart3, Christopher Maurer4, Toshikazu Miyoshi1, Ali Dhinojwala1. 1. School of Polymer Science and Polymer Engineering, The University of Akron, Akron, Ohio 44325, United States. 2. Department of Chemical Engineering, The University of Akron, Akron, Ohio 44325, United States. 3. Department of Chemistry and Biochemistry, University of California, San Diego, California 92093, United States. 4. redhouse Studio, Cleveland, Ohio 44113, United States.
Abstract
Melanin, a widespread pigment found in many taxa, is widely recognized for its high refractive index, ultraviolet (UV) protection, radical quenching ability, metal binding, and many other unique properties. The aforementioned characteristic traits make melanin a potential candidate for biomedical, separation, structural coloration, and space applications. However, the commercially available natural (sepia) and synthetic melanin are very expensive, limiting their use in various applications. Additionally, eumelanin has been the primary focus in most of these studies. In the present study, we demonstrate that melanin can be extracted from the pathogenic black knot fungus Apiosporina morbosa with a yield of ∼10% using the acid-base extraction method. The extracted melanin shows irregular morphology. Chemical characterization using X-ray photoelectron spectroscopy, infrared spectroscopy, and solid-state nuclear magnetic resonance spectroscopy reveals that the melanin derived from black knots is the less explored nitrogen-free allomelanin. Additionally, the extracted melanin shows broadband UV absorption typical of other types of melanin. Because of the wide availability and low cost of black knots and the invasive nature of the fungus, black knots can serve as an alternative green source for obtaining allomelanin at a low cost, which could stimulate its use as an UV light absorber and antioxidant in cosmetics and packaging industries.
Melanin, a widespread pigment found in many taxa, is widely recognized for its high refractive index, ultraviolet (UV) protection, radical quenching ability, metal binding, and many other unique properties. The aforementioned characteristic traits make melanin a potential candidate for biomedical, separation, structural coloration, and space applications. However, the commercially available natural (sepia) and synthetic melanin are very expensive, limiting their use in various applications. Additionally, eumelanin has been the primary focus in most of these studies. In the present study, we demonstrate that melanin can be extracted from the pathogenic black knot fungus Apiosporina morbosa with a yield of ∼10% using the acid-base extraction method. The extracted melanin shows irregular morphology. Chemical characterization using X-ray photoelectron spectroscopy, infrared spectroscopy, and solid-state nuclear magnetic resonance spectroscopy reveals that the melanin derived from black knots is the less explored nitrogen-free allomelanin. Additionally, the extracted melanin shows broadband UV absorption typical of other types of melanin. Because of the wide availability and low cost of black knots and the invasive nature of the fungus, black knots can serve as an alternative green source for obtaining allomelanin at a low cost, which could stimulate its use as an UV light absorber and antioxidant in cosmetics and packaging industries.
Melanin,
a ubiquitous pigment that is found in many organisms ranging
from bacteria to mammals, is a heterogeneous polymer comprised of
phenolic and indolic polymeric compounds.[1−15] Melanin can be broadly categorized into three different groups based
on their structure and monomer units: eumelanin [made from 5,6-dihydroxyindole
(DHI) and 5,6-dihydroxyindole-2-carboxylic acid (DHICA)], pheomelanin
(containing 5-S-cysteinyldopa and 2-S-cysteinyldopa), and allomelanin (including pyomelanin, DHN-melanin,
1,4,6,7,9,12-hexahydroxyperylene-3,10-quinone-melanin, and catechol
melanin), with eumelanin being the most common one.[15,16] Melanin possesses many unique properties, including a high refractive
index (RI) (∼1.8–2), broadband absorption spectrum ranging
from ultraviolet (UV) to visible and infrared (IR) radiation, radical
quenching ability, metal ion chelation, and high antioxidant activity.[14,15,17−22] Indeed, melanin is thought of as the next generation material for
its use in cosmetics, structural coloration, electronics, nanocomposites,
and other applications, thereby increasing its demand.[23−27] Therefore, large-scale production of melanin is desirable to meet
this growing demand.Over the years, efforts have been made
to extract melanin from
various natural sources and to synthesize melanin using different
chemical precursors.[6,10,12,14,16,28−38] So far, melanin has been extracted from cuttlefish (Sepia officinalis) inks,[6,10,35] black fish crow feathers (Corvus ossifragus),[14] wild
turkey feathers (Meleagris gallopavo),[14] black human hair,[14,39] black garlic,[35] black oat,[12] various fungi (Cryptococcus neoformans, Aspergillus fumigatus, Pleurotus cystidiosus, Armillaria
cepistipes, Auricularia auricula, and Colletotrichum lagenarium),
and bacteria.[16,28−31,33,34,36,38,40] Majority of these extracted
melanins are eumelanins, only very few studies have isolated nitrogen-free
allomelanin.[12,16,41] Melanin has also been synthesized in the laboratory using dopamine, l-3,4-dihydroxyphenylalanine (DOPA), and DHN precursors.[32,37] However, the commercially available natural and synthetic melanin
(exclusively eumelanin) are very expensive, highlighting the need
for alternative cheaper sources for the large-scale production of
melanin.Here, we explore the idea of using black knots as an
alternative
source for melanin. Black knot is a widespread disease in North America
caused by the pathogenic ascomycetes fungus (Apiosporina
morbosa) that infects the woody parts of plum, cherry,
apricot, and chokecherry trees, mainly twigs and branches but occasionally
trunks.[42−45] Following the germination of spores, the fungus penetrates the host
tree’s tissues and stimulates an abnormal tumor-like outgrowth,
which matures and darkens over a period of reportedly 2 years into
hard and woody black knots (∼0.5–2″ diameter
and >1″ length).[42,43] The disease results
in poor fruit production, and in some cases, where most of the branches
are infested, it may cause the death of the whole tree. Works have
been done to control the black knot disease, where the knot-infested
twigs and branches are pruned and burnt down to control the infection.[46] However, to date, no report exists on extracting
melanin from these readily available pathogenic black knots.In the present study, we demonstrate that black knots are rich
in melanin using Raman spectroscopy. The melanin is extracted from
these fungal black knots using the acid–base extraction procedure,
which is simple and easy to operate and aids in removing chitin typically
present in the fungal cell wall.[16,29] The morphology,
chemistry, and UV-absorption ability of the extracted melanin is analyzed
using scanning electron microscopy (SEM), transmission electron microscopy
(TEM), X-ray photoelectron spectroscopy (XPS), Fourier transform infrared
(FTIR) spectroscopy, solid-state nuclear magnetic resonance (ss-NMR)
spectroscopy, and UV–Vis spectrophotometry. Our results indicate
that the black knot fungal melanin has irregular morphology with chemistry
similar to nitrogen-free allomelanin. Additionally, the extracted
melanin shows a broadband UV–Vis absorption spectrum typical
of other melanins, elucidating that the black knot waste could serve
as a sustainable source for obtaining melanin at a lower cost for
various commercial applications.[23,24,26,27]
Results
and Discussion
Identification of Melanin
in Black Knots and
Its Extraction
Black knot disease, caused by the pathogenic
fungus A. morbosa,[42−46] results in a tumor-like outgrowth on branches of
fruit trees, which darkens over time into hard-woody black knots (Figure a). Under the optical
microscope and SEM, the knots appear as a cluster of ∼150 μm
nodules (Figure b,c).
The dark color of the knots could be taken as an indicator of melanin
inside these knots. To further establish the existence of melanin,
we use Raman spectroscopy, a noninvasive technique that has the potential
to identify melanins.[47−50]Figure d shows a
representative Raman spectrum of the black knot, which shows two characteristic
melanin peaks at ∼1381 and ∼1593 cm–1 attributed to the vibrations of carbon atoms arranged in graphitic-like
domains, also observed previously in the Raman spectra of synthetic
DOPA melanin and natural melanin isolated from S. officinalis.[47−50] The peak at 1381 cm–1 has been associated with
the aromatic C–C linear stretching or aromatic C–N stretching
of the indole structure, while the peak at 1593 cm–1 has been attributed to C=C bonds of the indole structure
in the literature.[47,48] Thus, our Raman spectral results
confirm the presence of melanin in black knots, where melanin could
be playing a role in virulence, photoprotection, metal ion sequestration,
free radical scavenging, and mechanical strength.[1,13] However,
the exact function of melanin in these black knots remains unknown
and will be explored in future studies.
Figure 1
(a) Picture of a black
knot (A. morbosa). (b, c) Optical and
SEM images of the black knot fungus, where
the knot appears as a cluster of ∼150 μm nodules. Scale
bars are indicated on the images. (d) Representative Raman spectrum
of the black knot showing characteristic melanin peaks at 1381 and
1593 cm–1.
(a) Picture of a black
knot (A. morbosa). (b, c) Optical and
SEM images of the black knot fungus, where
the knot appears as a cluster of ∼150 μm nodules. Scale
bars are indicated on the images. (d) Representative Raman spectrum
of the black knot showing characteristic melanin peaks at 1381 and
1593 cm–1.Black knots, being a fungus, are rich in chitin and it has been
shown that it is extremely hard to completely get rid of polysaccharides
associated with melanin in the fungal cell well using only enzymatic
extraction.[16,33,36,51] In addition, enzymatic extraction is a laborious
process involving multiple steps and is not cost-effective. Here,
we have chosen a harsher acid–base extraction process because
it is relatively simple and easy to operate and therefore more cost-effective
(Figure ).[1,12,16,28−30,33,35,36,51] However, it is possible that the acid–base extraction process
may affect the final morphology and chemistry of extracted melanin.[39,52] The details of the extraction method employed to extract melanin
from black knots can be found in the Experimental
Section. Briefly, it utilizes the property of melanin to be
solubilized in highly basic conditions due to the deprotonation of
various melanin functional moieties.[12,16,28−30,35,36,53] Approximately
600 mg of melanin is obtained from a 6 g of starting material resulting
in a considerable (10%) yield. This extracted melanin shows a strong
EPR signal (Figure S1) indicating the existence
of free radicals, consistent with the literature findings.[33,34,37,51] Black knots are readily available at a cost of only 10 USD/lb, thus
they could potentially serve as an alternative source for producing
melanin at a cheaper cost. Additionally, the use of black knots to
obtain melanin aids in recycling the farm waste, thereby greatly benefiting
the environment. To understand the nature of melanin produced by the
black knot fungus, we characterize its morphology using SEM and TEM,
and its chemistry using a combination of spectroscopic techniques
including XPS, FTIR, and ss-NMR.
Figure 2
Schematic of the acid–base method
utilized for the extraction
and purification of melanin present in black knots.
Schematic of the acid–base method
utilized for the extraction
and purification of melanin present in black knots.
Characterization of Extracted Melanin
Morphological Characterization Using SEM
and TEM
Melanin extracted from black knots was observed using
SEM (Figure a,b) to
reveal its morphology relative to the original black knot. The extracted
melanin shows irregular morphology with little resemblance to melanin
from other biological sources including cuttlefish ink, bird feathers,
and human hair.[6,10,14,16,35] It is difficult
to ascertain whether the melanin is present in this irregular shape
itself in the black knot or the morphology gets affected as a consequence
of the acid–base extraction procedure previously observed for
human hair melanosomes.[39] TEM analysis
of the extracted melanin (Figure c,d) showed that the black knot melanin is composed
of 20–30 nm sized units, consistent with the previous literature
reports.[33]
Figure 3
(a,b) SEM images of the melanin isolated
from black knots. (c,d)
TEM images of the extracted melanin. Scale bars are indicated on the
images.
(a,b) SEM images of the melanin isolated
from black knots. (c,d)
TEM images of the extracted melanin. Scale bars are indicated on the
images.
X-ray
Photoelectron Spectroscopy
XPS is used to provide insight
into the chemical composition of black
knot powder (before extraction) and extracted melanin (after extraction). Figure a shows the survey
scans for black knot powder and extracted melanin samples. The black
knot survey scan shows predominantly carbon (71.4 ± 5.0%) and
oxygen (24.7 ± 4.5%) with a small amount of nitrogen (3.5 ±
0.9%) similar to the atomic percentages of these elements in a chitin
XPS spectrum collected in this study (Table S1 and Figure S2) and that reported by Kittle et al. for regenerated
chitin films.[54] The extracted melanin survey
scan, on the other hand, shows only carbon (74.5 ± 0.9%) and
oxygen (24.5 ± 1.2%) with a negligible amount of nitrogen. The
absence of nitrogen in the extracted melanin hints toward the presence
of nitrogen-free allomelanin in black knot fungus. As a control, we
collected the XPS spectrum for well-characterized sepia melanin (Figure S2 and Table S1), which shows 10.6 ±
1.2% nitrogen consistent with the literature.[14,16] To further confirm our results, we collected high-resolution carbon
C 1s and nitrogen N 1s spectra (Figure b–d). After obtaining the raw data, we first
corrected the C 1s spectra by shifting the largest peak to 285 eV
and then fit the C 1s spectra using five peaks mentioned in the literature
for melanin samples: C–C(H) (284.8 ± 0.2 eV, aliphatic
and aromatic bonds taken together), C–OH/C–N (286.4
± 0.2 eV), C=O (288 ± 0.2 eV), O–C=O
(289.7 ± 0.2 eV), and a π–π* shake up at 290–292
eV.[14,34] Both the black knot powder and extracted
melanin samples’ C 1s spectra show predominant peaks corresponding
to C–C(H) and C–O/C–N bonds and only minor C=O
and O–C=O peaks (Table S2). This is contrary to the XPS results reported for eumelanin in
the literature and sepia melanin in this study (Figure S2 and Table S2), suggesting that melanin extracted
from the black knot powder is different from DHI/DHICA-based eumelanin.[14,34] This is further corroborated by the absence of any nitrogen signal
in the extracted melanin high-resolution N 1s spectra (Figure d). The absence of nitrogen
in the extracted melanin hints toward the presence of nitrogen-free
allomelanin. Because previous reports suggest that ascomycetes fungi
such as the black knot fungus typically produce melanin using the
pentaketide pathway, we expect the extracted melanin to be 1,8-DHN-based
allomelanin.[1,16]
Figure 4
(a) XPS survey scans for the black knot
powder and extracted melanin.
The spectra have been vertically offset for clarity. (b,c) High-resolution
carbon C 1s spectra for the black knot powder and extracted melanin,
respectively. The fit line and the individual bands from curve fitting
have been indicated on the graph. (d) Comparison of high-resolution
nitrogen N 1s spectra for both black knot powder and extracted melanin
samples.
(a) XPS survey scans for the black knot
powder and extracted melanin.
The spectra have been vertically offset for clarity. (b,c) High-resolution
carbon C 1s spectra for the black knot powder and extracted melanin,
respectively. The fit line and the individual bands from curve fitting
have been indicated on the graph. (d) Comparison of high-resolution
nitrogen N 1s spectra for both black knot powder and extracted melanin
samples.
Fourier-Transform
Infrared Spectroscopy
The IR spectra obtained for the black
knot powder and extracted
melanin are shown in Figure . The IR spectrum of black knot fungus powder (red line) before
extraction shows strong peaks attributed to the C–O stretch
(1034, 1069, and 1110 cm–1) and C–O–C
stretch (1155 cm–1) reminiscent of the chitin and
other polysaccharides present in the fungal cell wall (for details,
see Figure S3).[54,55] The broad peak between 3100 and 3500 cm–1 is assigned
to the O–H or N–H stretch vibration in the chitin structure.
Previous studies with fungal melanin suggest a strong association
of melanin with chitin in the fungal cell wall along with mannoproteins,
β-glucans, and phospholipids, therefore, the peaks at 1630 and
1660 cm–1 in the black knot IR spectrum can be assigned
to the C=O stretch or amide I vibration.[56] After the acid–base extraction, the intensity of
peaks associated with chitin (1034, 1069, 1110, and 1155 cm–1) decreases significantly in the extracted melanin IR spectrum (blue
line), suggesting successful removal of chitin during extraction.
The peaks between 2850 and 2965 cm–1, assigned to
the stretching vibration of aliphatic C–H groups, persist even
after the acid–base extraction, suggesting the presence of
covalently bound lipids.[57] The IR spectrum
for extracted melanin shows strong peaks at 1610 and 1707 cm–1 corresponding to the C=O stretch or aromatic C=C stretch
vibrations of the quinonoid structures.[34,37,41,58,59] The broadband between 1200 and 1400 cm–1 suggests
the presence of C–O residues, which again resonates with the
structural hypothesis proposed for DHN-based allomelanins (Figure S3) and our XPS results. The broad peak
in the 3200–3400 cm–1 region is attributed
to the OH stretch of the naphthalene ring. Overall, our FTIR data
demonstrates a successful removal of chitin after the acid–base
extraction, and a significant resemblance of extracted melanin to
previously reported DHN-melanins.[37,41,58,59] The detailed IR peak
assignments for extracted melanin are provided in Table S3.
Figure 5
FTIR spectra of black knot (red line) and extracted melanin
(blue
line). The spectra have been vertically offset for comparison purposes.
FTIR spectra of black knot (red line) and extracted melanin
(blue
line). The spectra have been vertically offset for comparison purposes.
Solid-State 13C NMR
To confirm the chemical structure deciphered using
XPS and IR spectroscopies,
we measured and compared the 13C spin echo (SE) and dipolar
dephasing (DD) CP/MAS NMR spectra of black knot and extracted melanin
using the Bruker AVANCE III 300 NMR (Figure ). The SE NMR spectrum displays all kinds
of carbon species (protonated and deprotonated) present in the sample,
while the DD NMR spectrum displays nonprotonated and protonated carbons
with weak dipolar coupling. Similar to XPS and IR, the 13C SE CP/MAS NMR spectrum before extraction shows strong chitin signals
attributed to oxygenated aliphatic carbons (marked by green dashed
lines): 22 (−CH3), 55 (C2), 60 (C6), 71 (C3), 74
(C5), 83 (C4), 104 (C1), and 173 (C=O), as seen in the literature.[55,60] However, after extraction, the chitin peaks decrease significantly
again confirming the removal of chitin using the acid–base
extraction procedure. The extracted melanin 13C SE CP/MAS
NMR spectrum shows a peak at 172 ppm (carbonyl peak, C=O),
broad peaks spanning from 100 to 160 ppm (protonated and nonprotonated
aromatic carbons in different chemical environments, for details,
see Figure S4), and a peak around 20–40
ppm (mostly protonated aliphatic carbons).[14,20] The presence of aliphatic signatures could indicate the presence
of covalently bound lipids that are not removable using the acid–base
extraction method, also seen in IR spectroscopy.[56] Further, the broadening of the spectra is most likely caused
by the intrinsic nature of melanin. Similar features were observed
in the 13C CP/MAS NMR spectrum of extracted melanin acquired
using a 750 MHz Magnex Scientific magnet and a Bruker spectrometer
(Figure S5), except for a better signal-to-noise
ratio. Our 13C CP/MAS NMR spectra for extracted melanin
are similar to previously reported spectra for various fungal melanins
and synthetic DHN allomelanin nanoparticles.[33,37,51,56,61,62]Figure inset shows the 15N NMR spectrum
of extracted melanin, which shows no signal, confirming the absence
of nitrogen in the extracted melanin consistent with our XPS results.
Figure 6
Comparison
of the SE (red solid line) and DD (blue dashed line) 13C CP/MAS NMR spectra of black knot and extracted melanin
acquired using Bruker AVANCE III 300 NMR. The SE NMR spectrum shows
all protonated and nonprotonated carbon species present in the sample,
while the DD NMR spectrum displays nonprotonated and protonated carbons
with weak dipolar coupling. The chemical structure of chitin is shown
with different numbers assigned to the carbon atoms corresponding
to peaks observed in the NMR spectra of black knot powder. Inset shows
the 15N ss-NMR spectrum of extracted melanin acquired using
a 750 MHz Magnex Scientific magnet and a Bruker spectrometer. The
absence of nitrogen signal highlights the chemistry of extracted melanin
to be nitrogen-free allomelanin.
Comparison
of the SE (red solid line) and DD (blue dashed line) 13C CP/MAS NMR spectra of black knot and extracted melanin
acquired using Bruker AVANCE III 300 NMR. The SE NMR spectrum shows
all protonated and nonprotonated carbon species present in the sample,
while the DD NMR spectrum displays nonprotonated and protonated carbons
with weak dipolar coupling. The chemical structure of chitin is shown
with different numbers assigned to the carbon atoms corresponding
to peaks observed in the NMR spectra of black knot powder. Inset shows
the 15N ss-NMR spectrum of extracted melanin acquired using
a 750 MHz Magnex Scientific magnet and a Bruker spectrometer. The
absence of nitrogen signal highlights the chemistry of extracted melanin
to be nitrogen-free allomelanin.Our combined XPS, IR, and NMR spectroscopic data suggest that the
melanin present in black knots is nitrogen-free allomelanin and is
strongly associated with chitin in the fungal cell wall. Based on
the previous literature reports on fungal melanin, we propose the
model shown in Figure a for the A. morbosa fungal cell wall,
where melanin exists in the cell wall along with chitin, glucans,
and lipids.[51] Furthermore, we believe that
the extracted melanin is 1,8-DHN based on the expectation that ascomycetes
fungi typically synthesize melanin from the pentaketide pathway using
1,8-DHN precursor (Figure b).[1,16] In this pathway, pentaketide
is first converted into 1,3,6,8-tetrahydroxynapthalene (1,3,6,8-THN),
which undergoes reduction to produce scytalone. This intermediate
is then converted into 1,3,8-trihydroxynapthalene (1,3,8-THN) by a
dehydration step, followed by its reduction to vermelone and subsequent
dehydration to 1,8-DHN. Two of these DHN molecules combine to produce
either a 1,1′-dimer or a 2,2′-dimer. Both of these dimers
are eventually converted into melanin granules, as shown in Figure a.
Figure 7
(a) Schematic showing
the major constituents in melanized ascomycetes
fungus (A. morbosa) also known as black
knot. (b) Biosynthetic pathway of DHN-melanin from pentaketide based
on the previous literature.[1,37]
(a) Schematic showing
the major constituents in melanized ascomycetes
fungus (A. morbosa) also known as black
knot. (b) Biosynthetic pathway of DHN-melanin from pentaketide based
on the previous literature.[1,37]
UV–Vis Spectrophotometry
The DHN-based
allomelanin extracted from black knots shows a broadband
absorption of light from 300 to 800 nm (Figure a), which is a typical absorption profile
of most melanins.[14,16] The absorbance is high in the
UV region and gradually decreases as the wavelength increases because
the complex conjugated structure of melanin can absorb UV photons
and blue solar light. As the concentration of extracted melanin increases,
the absorbance increases as illustrated in Figure a. The imaginary part of RI of extracted
melanin (km) is calculated using eqs –4 (for details, see Experimental Section) using the absorbance data for the solutions of extracted melanin.
The km values calculated from different
concentration solutions are similar, consistent with expectations
from the theory. Our measured km values
for black knot-extracted allomelanin are similar to those reported
by Li et al. for polydopamine and poly(dopamine-l-DOPA) thin
films measured using ellipsometry.[22]
Figure 8
(a) UV–Vis
absorbance spectra of extracted melanin in aqueous
NaOH solutions with different concentrations (given in mg/mL). (b)
Imaginary part of the RI of extracted melanin (km), calculated from the UV–Vis absorbance data, as a
function of wavelength. Different colored curves are for each concentration
[color scheme is the same as shown in (a)] and the black curve is
the averaged value of all five concentrations.
(a) UV–Vis
absorbance spectra of extracted melanin in aqueous
NaOH solutions with different concentrations (given in mg/mL). (b)
Imaginary part of the RI of extracted melanin (km), calculated from the UV–Vis absorbance data, as a
function of wavelength. Different colored curves are for each concentration
[color scheme is the same as shown in (a)] and the black curve is
the averaged value of all five concentrations.
Conclusions
In summary, we successfully
report the extraction of melanin from
pathogenic black knots via the acid–base extraction procedure
with a yield of 10%. Black knots offer advantages over other melanin
sources in terms of cost, scalability, and sustainability. The extracted
melanin shows an irregular morphology different from other natural
melanins. Chemical analysis using XPS suggests that the extracted
melanin is allomelanin confirmed by the absence of nitrogen in survey
and high-resolution N 1s XPS scans of extracted melanin. Furthermore,
characterization using IR and ss-NMR confirms the chemical nature
of extracted melanin. The extracted melanin presents a broadband monotonic
absorption of light and thus could be applied for UV protection in
various applications.
Experimental Section
Materials
Black knots (A. morbosa) were obtained from a local farm in Ohio.
Reagent grade sodium hydroxide (NaOH), hydrochloric acid (37% HCl
by weight), and ethanol, procured from Sigma-Aldrich, were used for
melanin extraction. All glassware used was cleaned using a base bath
followed by thorough rinsing with ultrapure water (18.2 MΩ cm,
Millipore filtration system with deionizing and organic removal columns).
Melanin Extraction
Melanin was extracted
from black knots using the literature reported acid–base extraction
procedure with slight adjustments.[1,4,6,16,29,30,39,63,64] Black knots
were scraped for the black outer part leaving the internal wooden
part intact. The black part (coarse grains, ∼6 g) was ground
into a fine powder using a ball mill before boiling in water at 120
°C for 10 min to kill any bacteria and remove dust particles.
After discarding water from the previous step, the left-over black
residue was mixed with 250 mL of 1 M NaOH and autoclaved at 120 °C
for 20 min twice. This step aids in solubilizing the melanin in aqueous
media, which was then separated in the supernatant phase from the
remaining components by centrifugation at 8000 rpm for 15 min. Afterward,
a concentrated HCl solution (37%) was added to the supernatant until
pH equals 1 to allow the precipitation of melanin. The precipitated
melanin was then collected by centrifugation at 8000 rpm for 15 min,
which was further refluxed in the concentrated HCl solution (37%)
for 1 day to hydrolyze the proteins, carbohydrates, and lipids associated
with melanin. The final product was rinsed with ultrapure water (three
times), ethanol (once), and water (once) again before lyophilizing
it to obtain the final melanin powder.
Morphological
Characterization
The
morphology of raw black knots and extracted melanin was analyzed using
optical light microscopy (Olympus BX-51) and SEM (JEOL-7401) with
an acceleration voltage of 3–4 kV and a current of 20 μA.
Raw black knots were ground into fine powder to observe their morphology.
To analyze the morphology of extracted melanin, a small amount of
it was suspended in water and then drop cast on a clean silicon wafer
placed on the hot plate to allow quick water evaporation. The silicon
wafer was subsequently adhered to an aluminum stub using a double-sided
carbon tape to observe the morphology of melanin. A small amount of
the extracted melanin aqueous suspension was also drop cast on the
TEM grid to analyze its morphology using TEM (JEM-1230, JEOL Ltd).
Chemical Characterization
Raman
Spectroscopy
Raman spectra
of the black knot powder were obtained using the Renishaw inVia Raman
confocal microscope with a 514 nm excitation laser and 50× objective
lens. Spectra were collected over the range 1000–2000 cm–1 and averaged over at least three accumulations, each
with an exposure time of 30 s. At least three independent measurements
were done to ensure reproducibility of results.
X-ray Photoelectron Spectroscopy
XPS scans were collected
for the black knot powder and extracted
melanin using the PHI 5000 VersaProbe III Surface Analysis instrument
from Physical Electronics interfaced with a computer equipped with
ULVAC MultiPak software for operation and data analysis. Spectra were
recorded using a microfocused Al Kα radiation (25 W, 15 kV,
and 100 μm) with a probe depth of 10–12 nm. A base pressure
less than 2 × 10–8 Pa and an operating pressure
of ∼2 × 10–6 Pa were used. The 117.4
eV pass energy was used for survey scans (0–1400 eV) and the
pass energy of 11.75 eV was used for the high-resolution C 1s (278–292
eV) and N 1s scans (394–406 eV). The peak fitting of high-resolution
scans was carried out using a standard least-squares algorithm on
Multipak software provided by PHI VersaProbe and XPS Tool (XPST) provided
by Wavemetrics. Because no significant differences were observed in
the obtained results from the two software packages, we averaged the
numbers to report the percentages of different types of carbon bonds
(Table S2). The C 1s peak is shifted because
of the surface charge neutralization, which is corrected by manually
shifting the peak to 284.8 eV, the binding energy. Fitting was done
using a Gaussian–Lorentzian (90:10) function with a Shirley
background subtraction.
FTIR Spectroscopy
IR spectra were
acquired using the Thermo Scientific Nicolet iS50 Fourier transform
infrared spectrometer. The black knot (or the extracted melanin) powder
(approx. 1–2 mg) was ground with 160 mg of potassium bromide
(KBr, FTIR grade, Sigma-Aldrich) using an agate mortar and pestle.
The fine ground powder was compressed to a semi-transparent pellet
using a die and hydraulic press (OMEGA CN9000). The formed pellets
were placed in the vacuum oven at room temperature overnight to remove
any adsorbed water. The pure KBr pellet was used as the background
for obtaining the IR spectra of samples in the transmission mode.
An average of 32 scans were collected with a resolution of 4 cm–1 in the 400–4000 cm–1 range.
Solid-State NMR
The ss-NMR spectra
were acquired using two different instruments. In the first case,
CP/MAS spectra were collected using the Bruker AVANCE III 300 NMR
with 13C and 1H resonance frequencies of 75.6
and 300.1 MHz, respectively. The samples (black knot and extracted
melanin powders) were packed in 4 mm diameter cylindrical rotors.
The magic-angle spinning (MAS) rate for SE and DD experiments was
12 kHz. 1H spin–lattice relaxation time in the laboratory
frame (τ1H) was measured by the inversion-recovery
method (180-τ-90°) and was determined to be 204.8 and 512.5
ms for black knot and extracted melanin powders, respectively. In 13C CP/MAS experiments, 1H 90◦ pulse length, CP contact time, and recycle delay were set to 3.3
μs, 2 ms, and 2 s, respectively. Two-pulse phase-modulated decoupling
frequency was set to be 75.8 KHz (180◦ pulse length
of 6.6 μs) to detect 13C signals. The 13C chemical shift was calibrated externally based on the methine peak
of adamantane at 29.46 ppm.In the second case, ss-NMR spectra
were recorded for the extracted melanin using a 750 MHz Magnex Scientific
magnet and a Bruker spectrometer at 280 K. Powdered extracted melanin
sample ∼28 mg) was packed in a 3.2 mm diameter Bruker rotor.
1D 13C CP spectrum was acquired with 16.4k scans and a
recycle delay of 3 s. The CP contact times were optimized to 0.9 ms,
with a 1H decoupling frequency of 83 kHz and a spinning
frequency of 13.5 kHz. The 1D 15N CP spectrum was acquired
with 1.1 ms contact time, 83 kHz 1H decoupling frequency,
16.5k scans, 3 s recycle delay, and 17.5 kHz spinning frequency. Chemical
shifts for 13C NMR were referenced to the reported values
of adamantane at 38.5 and 29.5 ppm. Chemical shift values for 13C and 15N are reported in parts per million (ppm)
relative to these referenced values.
UV–Vis
Spectrophotometry
UV–Vis
absorption spectra were collected using an Agilent Cary 60 UV–visible
spectrophotometer in the range of 300–800 nm. The extracted
melanin was dissolved in 1 M NaOH at a concentration of 1 mg/mL. Subsequently,
different dilutions with blank 1 M NaOH were made to collect the UV–Vis
absorption spectra for 0.005, 0.01, 0.015, 0.02, and 0.025 mg/mL solutions,
that obey the Beer–Lambert law.[35,59] The same NaOH
solution was used as a control. The collected UV–Vis absorbance
data was used to calculate the imaginary part of the RI (km) of the extracted melanin using the following procedure.The Beer–Lambert law relates transmission (T(λ)) to the extinction coefficient (u(λ))
and the optical length (d) using the expression given
in eq . The electromagnetic
wave theory further relates the extinction coefficient (u(λ)) to the imaginary part of the RI of a solution (keff) using eq . Equations and 2 can be combined to provide a
direct relationship between keff and transmission T(λ), as shown in eq . Because the absorption of 1 M NaOH solution is negligible
in the wavelength range from 300 to 800 nm, the measured absorption
of extracted melanin solutions results solely from the extracted melanin.
Thus, km can be determined from keff by normalizing it with the volume fraction
of the extracted melanin (Vm), as given
in eq .
Authors: Yan Liu; Valerie R Kempf; J Brian Nofsinger; Emily E Weinert; Mark Rudnicki; Kazumasa Wakamatsu; Shosuke Ito; John D Simon Journal: Pigment Cell Res Date: 2003-08
Authors: Christine Chrissian; Emma Camacho; Man Shun Fu; Rafael Prados-Rosales; Subhasish Chatterjee; Radames J B Cordero; Jennifer K Lodge; Arturo Casadevall; Ruth E Stark Journal: J Biol Chem Date: 2020-01-02 Impact factor: 5.157