Literature DB >> 34981860

The dynamic basis of structural order in proteins.

Chilaluck Konkankit1, S Rackovsky1,2.   

Abstract

We compare the sequences of folded and intrinsically disordered proteins (IDPs), using bioinformatic methods recently developed to study protein dynamic properties. We demonstrate that the two classes of sequences are organized in diametrically opposite ways with respect to long-length-scale dynamic properties. We further demonstrate a statistically significant difference between the amino acid compositions of folded and disordered proteins, which is expressed in dynamic properties. Our results indicate that the long-length-scale properties of sequences are critical in determining whether proteins are able to fold, and, more generally, that they are central to an understanding of protein physics. They further provide a physical basis for the empirically observed differences in amino acid composition between folded and IDPs.
© 2022 Wiley Periodicals LLC.

Entities:  

Keywords:  dynamic properties; intrinsically disordered proteins; protein folding

Mesh:

Substances:

Year:  2022        PMID: 34981860      PMCID: PMC9007817          DOI: 10.1002/prot.26296

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  18 in total

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Authors:  Thomas A Anderson; Matthew H J Cordes; Robert T Sauer
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-12       Impact factor: 11.205

2.  Characterization of architecture signals in proteins.

Authors:  S Rackovsky
Journal:  J Phys Chem B       Date:  2006-09-28       Impact factor: 2.991

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Authors:  S Rackovsky
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Authors:  Patrick A Alexander; Yanan He; Yihong Chen; John Orban; Philip N Bryan
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-18       Impact factor: 11.205

5.  "Hidden" sequence periodicities and protein architecture.

Authors:  S Rackovsky
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-21       Impact factor: 11.205

6.  Spectral analysis of a protein conformational switch.

Authors:  S Rackovsky
Journal:  Phys Rev Lett       Date:  2011-06-14       Impact factor: 9.161

7.  Sequence-specific dynamic information in proteins.

Authors:  H A Scheraga; S Rackovsky
Journal:  Proteins       Date:  2019-06-11

8.  Homolog detection using global sequence properties suggests an alternate view of structural encoding in protein sequences.

Authors:  Harold A Scheraga; S Rackovsky
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-24       Impact factor: 11.205

9.  Intrinsically disordered proteins: Chronology of a discovery.

Authors:  Vladimir N Uversky; Prakash Kulkarni
Journal:  Biophys Chem       Date:  2021-09-29       Impact factor: 2.352

10.  DisProt 7.0: a major update of the database of disordered proteins.

Authors:  Damiano Piovesan; Francesco Tabaro; Ivan Mičetić; Marco Necci; Federica Quaglia; Christopher J Oldfield; Maria Cristina Aspromonte; Norman E Davey; Radoslav Davidović; Zsuzsanna Dosztányi; Arne Elofsson; Alessandra Gasparini; András Hatos; Andrey V Kajava; Lajos Kalmar; Emanuela Leonardi; Tamas Lazar; Sandra Macedo-Ribeiro; Mauricio Macossay-Castillo; Attila Meszaros; Giovanni Minervini; Nikoletta Murvai; Jordi Pujols; Daniel B Roche; Edoardo Salladini; Eva Schad; Antoine Schramm; Beata Szabo; Agnes Tantos; Fiorella Tonello; Konstantinos D Tsirigos; Nevena Veljković; Salvador Ventura; Wim Vranken; Per Warholm; Vladimir N Uversky; A Keith Dunker; Sonia Longhi; Peter Tompa; Silvio C E Tosatto
Journal:  Nucleic Acids Res       Date:  2016-11-28       Impact factor: 16.971

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