| Literature DB >> 34977133 |
Yanxia Liu1, Peng Gao1, Yuhao Wu1, Xiaorui Wang1, Xiaoming Lu1, Chao Liu2, Ningyang Li1, Jinyue Sun2, Jianbo Xiao3, Simal-Gandara Jesus3.
Abstract
Chinese garlic powder (GP) is exported to all countries in the world, but the excess of microorganisms is a serious problem that affects export. The number of microorganisms has a serious impact on the pricing of GP. It is very important to detect and control the microorganism in GP. The purpose of this study was to investigate the contamination and drug resistance of microorganisms during the processing of GP. We used metagenomics and Illumina sequencing to study the composition and dynamic distribution of antibiotic resistance genes (ARGs), but also the microbial community in three kinds of garlic products from factory processing. The results showed that a total of 126 ARG genes were detected in all the samples, which belonged to 11 ARG species. With the processing of GP, the expression of ARGs showed a trend to increase at first and then to decrease. Network analysis was used to study the co-occurrence patterns among ARG subtypes and bacterial communities and ARGs.Entities:
Keywords: antibiotic resistance genes; co-occurrence patterns; garlic powder; metagenome sequencing; microbial community
Year: 2021 PMID: 34977133 PMCID: PMC8717741 DOI: 10.3389/fnut.2021.800932
Source DB: PubMed Journal: Front Nutr ISSN: 2296-861X
Figure 1ARGs detected during GP processing. (A) The number of resistance genes detected during GP processing. (B) The relative abundance of ARGs in the three products.
Figure 2The differences in the composition of ARGs during the GP processing. (A) UPGMA cluster analysis of ARG abundance in three garlic products. (B) PCA based on Bray–Curtis distance showed the overall distribution pattern of ARGs during GP processing.
Figure 3The distribution of ARGs. Heatmap showed the distribution of ARGs in different types of products during GP processing.
Figure 4The network analysis revealing the co-occurrence patterns among ARG subtypes in GC, GS, and GP. The nodes were colored according to ARG types. A connection represents a strong (Spearman's correlation coefficient r > 0.90) and significant (p ≤ 0.001) correlation. Edges and node size weighted were based on the correlation coefficient and the relative abundance of ARGs, respectively.
Figure 5Heatmap of the relative abundance of bacterial communities at phylum and genus levels during the garlic processing. Clustered at the gate level according to abundance and similarity.
Figure 6The network analysis revealing the co-occurrence patterns among ARGs and microbial taxa. The nodes were colored according to bacterial phyla and ARG types. Edges and node size weighted were based on the correlation coefficient and the relative abundance of ARGs and bacterial communities, respectively. The edge color represents a positive correlation (red) and a negative correlation (green).