| Literature DB >> 34977024 |
Hui Kong1, Ming-Li Sun1, Xin-An Zhang1, Xue-Qiang Wang2,3.
Abstract
Osteoarthritis (OA) is a joint disease that is pervasive in life, and the incidence and mortality of OA are increasing, causing many adverse effects on people's life. Therefore, it is very vital to identify new biomarkers and therapeutic targets in the clinical diagnosis and treatment of OA. ncRNA is a nonprotein-coding RNA that does not translate into proteins but participates in protein translation. At the RNA level, it can perform biological functions. Many studies have found that miRNA, lncRNA, and circRNA are closely related to the course of OA and play important regulatory roles in transcription, post-transcription, and post-translation, which can be used as biological targets for the prevention, diagnosis, and treatment of OA. In this review, we summarized and described the various roles of different types of miRNA, lncRNA, and circRNA in OA, the roles of different lncRNA/circRNA-miRNA-mRNA axis in OA, and the possible prospects of these ncRNAs in clinical application.Entities:
Keywords: circRNA; lncRNA; lncRNA/circRNA-miRNA-mRNA axis; miRNA; osteoarthritis
Year: 2021 PMID: 34977024 PMCID: PMC8714905 DOI: 10.3389/fcell.2021.774370
Source DB: PubMed Journal: Front Cell Dev Biol ISSN: 2296-634X
FIGURE 1Formation and mechanism of miRNA. miRNAs are first transcripted into longer primary miRNAs in the nucleus and then processed into hairpin RNAs of 60–70 nucleotides in the nucleus by Drosha, Pasha et al. The precursor miRNAs are transported out of the cell nucleus with the help of the Ran-GTP-dependent nucleoplasmic/cell transporter Exprotin-5 and split into 21–25 nucleotide length double-stranded miRNAs in the cytoplasm by Dicer. Subsequently, the double helix is derotated by the action of the derotation enzyme, and one of the strands is integrated into the RNA-induced silencing complex (RISC), an asymmetric RISC assembly is formed, and the other chain is immediately degraded.
Functional characterization of the miRNAs in OA.
| miRNA | Expression | Target gene(s) | Tissue/cell source | Region | Model | Functions | Reference |
|---|---|---|---|---|---|---|---|
| miR-103 | Up | SPHK1 | Cartilage tissue | knee joint, hip joint | OA rat model | Apoptosis |
|
| Up | Sox6 | Cartilage tissue | knee joint | OA cell model | Apoptosis |
| |
| miR-34a | Up | TGIF2 | Synovial fluid | knee joint | OA cell model | Apoptosis |
|
| Up | DLL1 | Cartilage tissue | knee joint, hip joint | OA rat model | Apoptosis |
| |
| Up |
| Cartilage tissue | knee joint | OA rat model | Apoptosis |
| |
| Up | Cyr61 | Cartilage tissue | knee joint | OA cell model | Apoptosis |
| |
| Up | —— | Cartilage tissue | knee joint | OA rat model | Apoptosis |
| |
| Up | —— | Cartilage tissue | knee joint | OA rat model | Apoptosis |
| |
| miR-486-5p | Up | SMAD2 | Cartilage tissue | knee joint | OA cell model | Apoptosis |
|
| miR-375 | Up |
| Cartilage tissue | knee joint | OA mouse model | Apoptosis |
|
| Up | ATG2B | Cartilage tissue | knee joint | OA mouse model | Autophagy |
| |
| miR-29b | Up | PTHLH | Cartilage tissue | knee joint | OA mouse model | Apoptosis |
|
| Up |
| —— | —— | OA mouse model | cartilage degradation |
| |
| Up | COL2A1, COL1A2 | Cartilage tissue | knee joint, hip joint | OA mouse model | Apoptosis |
| |
| Up | COL1A1, COL3A1 | Cartilage tissue | knee joint, hip joint | OA cell model | Apoptosis |
| |
| miR-29b-3p | Up | PGRN | Cartilage tissue | knee joint | OA rat model | Apoptosis |
|
| miR-124A | Up | QKI, MAP 1B | Cartilage tissue | knee joint | OA rat model | cartilage degradation |
|
| miR-455-3p | Up | PAK2 | Cartilage tissue | knee joint | OA mouse model | cartilage degradation |
|
| Up | COL2A1 | Cartilage tissue | —— | OA cell model | Apoptosis, Inflammation |
| |
| Up | PTEN | Bone marrow, Cartilage tissue | —— | OA mouse model | Apoptosis, Inflammation |
| |
| miR-30b | Up | ERG | Cartilage tissue | knee joint | OA cell model | cartilage degradation |
|
| miR-181 | Up | PTEN | Cartilage tissue | knee joint | OA cell model | Apoptosis |
|
| miR-324-5p | Up | Gpc1 | Cartilage tissue | —— | OA cell model | —— |
|
| miR-146a | Up | TRAF6 | Cartilage tissue | knee joint, hip joint | OA cell model | Apoptosis |
|
| Up | Camk2d, Ppp3r2 | Cartilage tissue | knee joint | OA mouse model | cartilage degradation |
| |
| Up | Smad4 | Cartilage tissue | knee joint | OA rat model | Apoptosis |
| |
| Up | CXCR4 | Cartilage tissue | —— | OA mouse model | nflammation |
| |
| miR-146a-5p | Up | TRAF6 | Cartilage tissue | hip joint | OA cell model | Apoptosis |
|
| Up | TXNIP | SW1353 and C28/I2 cells | —— | —— | Apoptosis, Inflammation |
| |
| Up | —— | Cartilage tissue, Blood | —— | OA cell model | cartilage degradation, Inflammation |
| |
| miR-146b | Up | A2M | Cartilage tissue | knee joint | OA mouse model | Apoptosis, cartilage degradation |
|
| Up | —— | Bone marrow, Cartilage tissue | —— | OA cell model | Apoptosis |
| |
| miR-1236 | Up | rs4246215 | Cartilage tissue | knee joint | OA cell model | Apoptosis |
|
| miR-10a-5p | Up | HOXA3 | Cartilage tissue, Blood | —— | OA mouse model | Apoptosis, cartilage degradation |
|
| Up | HOXA1 | Cartilage tissue | hip joint | OA mouse model | Apoptosis |
| |
| miR-27b-3p | Up | KDM4B | Cartilage tissue | knee joint | OA rat model | Inflammation |
|
| miR-483-5p | Up | Matn3, Timp2 | Cartilage tissue | knee joint | OA mouse model | cartilage degradation |
|
| miR-340-5p | Up | FMOD | Cartilage tissue | knee joint | OA mouse model | Apoptosis |
|
| miR-195 | Up | PTHrP | Cartilage tissue | knee joint | OA rat model | Apoptosis |
|
| miR-195-5p | Up | REGγ | Cartilage tissue | —— | OA mouse model | Apoptosis |
|
| miR-23b-3p | Up | COL11A2 | Cartilage tissue | knee joint | OA mouse model | inflammation |
|
| miR-448 | Up | matrilin-3 | Cartilage tissue | knee joint | OA cell model | Apoptosis, cartilage degradation |
|
| miR-203 | Up | ERα | Blood, Cartilage tissue | —— | OA rat model | cartilage degradation |
|
| Up | MCL-1 | Cartilage tissue | —— | OA cell model | Apoptosis, cartilage degradation, Inflammation |
| |
| miR-203a | Up |
| Cartilage tissue | knee joint | OA cell model | cartilage degradation, Inflammation |
|
| miR-21 | Up | GDF-5 | Cartilage tissue | —— | OA cell model | Apoptosis |
|
| miR-21-5p | Up | FGF18 | Cartilage tissue | knee joint | OA mouse model | Apoptosis, cartilage degradation |
|
| miR-218-5p | Up | PIK3C2A | Cartilage tissue | knee joint | OA mouse model | cartilage degradation, Apoptosis |
|
| miR-449a | Up | GDF5 | Cartilage tissue | —— | OA cell model | cartilage degradation |
|
| miR-125b-5p | Up | SYVN1 | Synovial fluid | —— | OA cell model | Apoptosis |
|
| miR-384-5p | Up | SOX9 | Cartilage tissue | knee joint | OA mouse model | Apoptosis |
|
| miR-23a-3p | Up | SMAD3 | Cartilage tissue | —— | OA cell model | cartilage degradation |
|
| miR-139 | Up | MCPIP1 | Cartilage tissue | —— | OA cell model | Apoptosis |
|
| miR-206 | Up | —— | Cartilage tissue | knee joint | OA cell model | Apoptosis |
|
| miR-382-3p | Up | CX43 | Cartilage tissue | knee joint | OA cell model | Inflammation |
|
| miR-101 | Up | Sox9 | Synovial fluid | knee joint | OA rat model | cartilage degradation |
|
| miR-30a | Up | Sox9 | Cartilage tissue | knee joint | OA cell model | cartilage degradation, Inflammation |
|
| Up | DLL4 | bone marrow | —— | OA rat model | Cell differentiation |
| |
| miR-216b | Up | Smad3 | Cartilage tissue | knee joint | OA cell model | cartilage degradation |
|
| miR-128a | Up | Atg12 | Cartilage tissue | knee joint | OA rat model | Autophagy |
|
| miR-20a | Up | IkBβ | Cartilage tissue, blood | —— | OA rat model | Inflammation |
|
| miR-136 | Up | Mcl-1 | Cartilage tissue | —— | OA cell model | Apoptosis, cartilage degradation, Inflammation |
|
| miR-130b | Up | SOX9 | Bone marrow, Cartilage tissue | —— | OA rat model | Cell differentiation |
|
| miR-132-3p | Up | ADAMTS-5 | Bone marrow, Cartilage tissue | —— | OA rat model | Cell differentiation |
|
| miR-1246 | Up | HNF4γ | Cartilage tissue | —— | OA mouse model | Inflammation |
|
| miR-9 | Up | —— | Cartilage tissue | —— | OA mouse model | Apoptosis, cartilage degradation, Inflammation |
|
| miR-222 | Up | HDAC-4 | Cartilage tissue | knee joint | OA mouse model | Apoptosis |
|
| miR-155 | Up | PIK3R1 | Cartilage tissue | knee joint | OA cell model | Apoptosis |
|
| miR-33a | Up | Smad7 | Cartilage tissue | knee joint | OA cell model | Cell differentiation |
|
| miR-93 | Down | TLR4 | Cartilage tissue, Synovial fluid | knee joint | OA mouse model | Apoptosis, inflammation |
|
| miR-93-5p | Down | TCF4 | Cartilage tissue | knee joint | OA rat model | Apoptosis |
|
| miR-92a-3p | Down | WNT5A | Bone marrow, Cartilage tissue | —— | OA mouse model | cartilage degradation |
|
| miR-92a-3p | Down | HDAC2 | Bone marrow, Cartilage tissue | —— | OA cell model | cartilage degradation |
|
| miR-92a-3p | Down | ADAMTS-4, ADAMTS-5 | Cartilage tissue | knee joint | OA cell model | cartilage degradation, Inflammation |
|
| miR-107 | Down | TRAF3 | Cartilage tissue | knee joint | OA rat model | Autophagy and apoptosis |
|
| miR-101a-3p | Down | UBE2D1, FZD4 | Cartilage tissue | —— | OA rat model | Apoptosis |
|
| miR-671 | Down | —— | Cartilage tissue | knee joint | OA mouse model | Apoptosis |
|
| miR-671-3p | Down | TRAF3 | Cartilage tissue | knee joint | OA cell model | cartilage degradation, Inflammation, Apoptosis |
|
| miR-140 | Down | —— | Synovial fluid, Cartilage tissue | knee joint | OA cell model | cartilage degradation |
|
| Down | RALA | Cartilage tissue | knee joint | OA cell model | Cell differentiation |
| |
| Down | IGFBP-5 | Cartilage tissue | knee joint | OA cell model | cartilage degradation |
| |
| Down | IGFBP5 | Cartilage tissue | knee joint | OA cell model | inflammation |
| |
| Down | ADAMTS5 | Cartilage tissue | —— | OA mouse model | cartilage degradation |
| |
| Down | MMP-13 | Cartilage tissue | —— | OA cell model | cartilage degradation | ( | |
| Down | SMAD1 | Cartilage tissue | —— | OA cell model | Apoptosis |
| |
| Down | NFAT3, SMAD3 | Cartilage tissue | knee joint | OA cell model | inflammation |
| |
| miR-140-3p | Down | CXCR4 | Cartilage tissue | knee joint | OA cell model | Apoptosis |
|
| miR-140-5p | Down | SMAD3 | —— | —— | OA mouse model | inflammation |
|
| Down | HMGB1 | Cartilage tissue | knee joint | OA cell model | inflammation |
| |
| Down | FUT1 | Cartilage tissue | knee joint | OA cell model | Apoptosis |
| |
| miR-33b-3p | Down | DNMT3A | Cartilage tissue | knee joint | OA cell model | Apoptosis |
|
| miR-766-3p | Down | AIFM1 | Cartilage tissue | —— | OA cell model | cartilage degradation |
|
| miR-26a | Down | —— | Cartilage tissue | knee joint | OA rat model | inflammation |
|
| miR-26a/miR-26b | Down | FUT4 | Cartilage tissue | knee joint | OA rat model | Apoptosis |
|
| miR-26a-5p | Down | PTGS2 | Bone marrow, Synovial fluid | —— | OA rat model | Apoptosis, Inflammation |
|
| miR-377-3p | Down | ITGA6 | Cartilage tissue | knee joint | OA cell model | Apoptosis |
|
| miR-410-3p | Down | HMGB1 | Synovial fluid, Cartilage tissue | knee joint | OA mouse model | Apoptosis, Inflammation |
|
| miR-142-3p | Down | HMGB1 | Cartilage tissue | knee joint | OA mouse model | Apoptosis, Inflammation |
|
| miR-210 | Down | HIF-3α | Cartilage tissue | knee joint | OA cell model | Apoptosis, cartilage degradation |
|
| Down | DR6 | Cartilage tissue | knee joint | OA rat model | Apoptosis, Inflammation |
| |
| miR-122 | Down | SIRT1 | Cartilage tissue | knee joint | OA cell model | cartilage degradation |
|
| miR-337-3p | Down | PTEN | Cartilage tissue | knee joint | OA cell model | Apoptosis |
|
| miR-129-3p | Down | CPEB1 | Cartilage tissue | knee joint | OA rat model | Apoptosis |
|
| miR-675-3p | Down | GNG5 | Cartilage tissue | knee joint | OA cell model | Apoptosis, cartilage degradation |
|
| miR-132 | Down | PTEN | Cartilage tissue, Blood | —— | OA rat model | Apoptosis |
|
| miR-137 | Down | TCF4 | Cartilage tissue | knee joint | OA rat model | Apoptosis, inflammation |
|
| miR-320c | Down |
| Cartilage tissue | knee joint | OA mouse model | Apoptosis |
|
| miR-29a | Down | Bax | Cartilage tissue | —— | OA cell model | Apoptosis |
|
| Down | VEGF | Synovial fluid | knee joint | OA cell model | cartilage degradation, Inflammation |
| |
| miR-193b-3p | Down | MMP-19 | Cartilage tissue | knee joint | OA cell model | Inflammation |
|
| miR-193b-3p | Down | HDAC3 | Cartilage tissue | knee joint | OA mouse model | cartilage degradation |
|
| miR-193b-5p | Down | HDAC7 | Cartilage tissue | knee joint, hip joint | OA cell model | Inflammation |
|
| miR-136-5p | Down | ELF3 | Bone marrow, Cartilage tissue | —— | OA mouse model | Apoptosis, cartilage degradation |
|
| miR-374a-3p | Down | WNT5B | —— | —— | OA cell model | Apoptosis |
|
| miR-19b-3p | Down | GRK6 | Cartilage tissue | knee joint, hip joint | OA cell model | cartilage degradation, Inflammation |
|
| miR-221-3p | Down | SDF1/CXCR4 | Cartilage tissue | knee joint | OA cell model | cartilage degradation |
|
| miR-502-5p | Down | TRAF2 | Cartilage tissue | knee joint, hip joint | OA cell model | cartilage degradation, Inflammation |
|
| miR-31 | Down | CXCL12 | Cartilage tissue | —— | OA cell model | Apoptosis |
|
| miR-488 | Down | ZIP-8 | Cartilage tissue | knee joint | OA mouse model | cartilage degradation |
|
| miR-125b | Down | ADAMTS-4 | Cartilage tissue | knee joint | OA cell model | —— |
|
| miR-181c | Down | NEAT1 | Synovial fluid | —— | OA cell model | Apoptosis, Inflammation |
|
| miR-615-3p | Down | —— | bone marrow | —— | OA rat model | Inflammation |
|
| miR-211-5p | Down | Fibulin-4 | Cartilage tissue | —— | OA rat model | cartilage degradation, Inflammation |
|
| miR-19a | Down | SOX9 | Cartilage tissue | knee joint | OA cell model | Apoptosis |
|
| miR-503-5p | Down | SGK1 | Cartilage tissue | knee joint | OA rat model | Apoptosis, Inflammation |
|
| miR-33 | Down | CCL2 | Cartilage tissue | —— | OA mouse model | Inflammation |
|
| miR-27 | Down | Leptin | Cartilage tissue | —— | OA rat model | Inflammation |
|
| miR-186 | Down | SPP1 | Cartilage tissue | —— | OA mouse model | Apoptosis |
|
| miR-149 | Down | TAK1 | Cartilage tissue | —— | OA cell model | Inflammation |
|
| miR-204-5p | Down | Runx2 | Cartilage tissue | knee joint | OA rat model | Apoptosis |
|
| miR-128-3p | Down | WISP1 | Cartilage tissue | knee joint | OA cell model | Apoptosis, cartilage degradation, Inflammation |
|
| miR-320 | Down |
| Cartilage tissue | —— | OA mouse model | Inflammation |
|
| miR-558 | Down | COX-2 | Cartilage tissue | knee joint | OA cell model | Inflammation |
|
| miR-634 | Down | PIK3R1 | Cartilage tissue | —— | OA cell model | cartilage degradation |
|
| miR-24 | Down | C-myc | Cartilage tissue | knee joint | OA rat model | Apoptosis |
|
| miR-365 | Down | HIF-2α | Cartilage tissue | knee joint | OA cell model | Apoptosis |
|
| miR-126-3p | Down | —— | Synovial fluid | knee joint | OA rat model | cartilage degradation, Inflammation |
|
| miR-520c-3p | Down | GAS2 | Cartilage tissue | hip joint | OA cell model | Apoptosis, cartilage degradation |
|
| miR-1207-5p | Down | CX3CR1 | Cartilage tissue | —— | OA cell model | Apoptosis, cartilage degradation |
|
| miR-152 | Down | TCF-4 | Cartilage tissue | knee joint, hip joint | OA rat model | Apoptosis |
|
| miR-296-5p | Down | TGF-β | Cartilage tissue | knee joint | OA cell model | Apoptosis, cartilage degradation |
|
| miR-373 | Down | P2X7R | Cartilage tissue, Blood | —— | OA cell model | cartilage degradation, Inflammation |
|
| miR-25-3p | Down | IGFBP7 | Cartilage tissue | —— | OA rat model | Apoptosis |
|
| miR-95-5p | Down | HDAC2, HDAC8 | Bone marrow, Cartilage tissue | —— | OA cell model | cartilage degradation |
|
| miR-181a | Down | GPD1L | Cartilage tissue | knee joint | OA cell model | Apoptosis |
|
| miR-411 | Down | HIF-1α | Cartilage tissue | —— | OA cell model | autophagy |
|
| miR-98 | Down | Bcl-2 | Cartilage tissue | —— | OA mouse model | Apoptosis |
|
| Down | Bcl-2 | Cartilage tissue | —— | OA rat model | cartilage degradation、Apoptosis |
| |
| Down | —— | Cartilage tissue | knee joint | OA rat model | Apoptosis |
| |
| miR-125b-5p | Down | TRAF6 | Cartilage tissue | knee joint, hip joint | OA cell model | Inflammation |
|
| miR-27a | Down | TLR4 | Cartilage tissue | knee joint, hip joint | OA rat model | cartilage degradation、Inflammation |
|
| Down | NF-κB | Cartilage tissue | knee joint | OA rabbit model | Apoptosis, Inflammation |
| |
| Down | PLK2 | Cartilage tissue | knee joint | OA rat model | Apoptosis |
| |
| miR-15a-5p | Down | PTHrP | Cartilage tissue | knee joint | OA cell model | Apoptosis |
|
| miR-9-5p | Down | Tnc | Cartilage tissue | knee joint, hip joint | OA mouse model | Apoptosis |
|
| miR-145 | Down | BNIP3 | Cartilage tissue | knee joint | OA mouse model | Apoptosis |
|
| miR-145 | Down | MKK4 | Cartilage tissue | —— | OA rat model | cartilage degradation |
|
| miR-145 | Down | TNFRSF11B | Cartilage tissue | knee joint | OA cell model | Apoptosis |
|
Abbreviations: SPHK1, sphingosine kinase-1; SOX9, SRY-Box 9; DLL1, delta-like protein 1; SIRT1, silent information regulator 1; SMAD2, SMAD, family member 2; PTHLH, parathyroid hormone-like hormone; Wnt5a, wnt family member 5A; PGRN, progranulin; MAP, 1B, microtubule associated protein 1B; Gpc1, glypican 1; Ppp3r2, calcineurin B, type II, protein phosphatase 3; TXNIP, thioredoxin-interacting protein; A2M, alpha-2-macroglobulin; KDM4B, lysine demethylase 4B; Matn3, cartilage matrix protein matrilin 3; Timp2, tissue inhibitor of metalloproteinase 2; PTHrP, parathyroid hormone-related protein; MCL-1, myeloid cell leukemia-1; GDF-5, growth differentiation factor 5; FGF18, fibroblast growth factor 18; GDF5, growth differentiation factor 5; SYVN1, synoviolin 1; CX43, connexin 43; TLR4, toll-like receptor 4; TCF4, transcription factor 4; HDAC2, histone deacetylase 2; ADAMTS-4, aggrecanase-1; TRAF3, TNF, receptorassociated factor 3; UBE2D1, ubiquitin-conjugating enzyme 2D1; FZD4, frizzled class receptor 4; MMP-13, matrix metalloproteinase-13; FUT1, fucosyltransferase 1; DNMT3A, DNA, methyltransferase 3A; DR6, death receptor 6; GNG5, G-protein subunit g 5; HDAC7, histone deacetylase 7; HDAC3, histone deacetylase 3; ELF3, E74-like factor 3; TRAF2, TNF, receptorassociated factor 2; SPP1, phosphoprotein 1; COX-2, cyclooxygenase-2; HIF-2α, hypoxia-inducible factor-2α; GAS2, Growth arrest-specific 2; P2X7R, P2X7 receptor; IGFBP7, insulin-like growth factor-binding protein 7; HIF-1α, hypoxia-inducible factor 1 alpha; Bcl-2, B-cell lymphoma 2; PLK2, polo-like kinase 2.
FIGURE 2Role of lncRNAs: 1. Epigenetic regulation: (A). lncRNA recruits chromatin remodeling and modification complexes to specific sites; regulates DNA or RNA methylation status, chromosome structure; and promotes the expression of related genes.2. Transcriptional regulation: (B). lncRNA can help generate mature mRNA by promoting the binding of pre-mRNA to alternative splicing factors; (C). ncRNA binding with transcription factors can inhibit the activity of target genes and inhibit their gene expression. 3. Post-transcriptional regulation: (D). Participation in mRNA translation; (E). Involvement in mRNA degradation. 4. Regulation of miRNA: (F). ncRNA can act as sponges of miR-compete for miR and alleviate the inhibition of target genes.
Functional characterization of the lncRNAs in OA.
| lncRNA | Expression | Target genes | Related genes | Tissue/cell source | Region | Model | Functions | Reference |
|---|---|---|---|---|---|---|---|---|
| ANRIL | Up | miRNA-122-5p | DUSP4 | Cartilage tissue, synoviocytes | knee joint | OA cell model | Cell proliferation and apoptosis |
|
| CASC2 | Up | —— | IL-17 | Blood, Synovial fluid, chondrocyte | —— | OA cell model | Cell proliferation and apoptosis |
|
| CIR | Up | —— | —— | Cartilage tissue | hip joint | OA rat model | Cell autophagy |
|
| Up | miR-130a | Bim | Cartilage tissue | knee joint | OA cell model | Cell proliferation and apoptosis |
| |
| Up | miR-27b | —— | Cartilage tissue | knee joint | OA cell model | Degradation of extracellular matrix |
| |
| HOTAIR | Up | —— | MMP | Cartilage tissue, Synovial fluid | temporomandibular | OA rabbit model | Cell proliferation and apoptosis |
|
| Up | —— | WIF-1 | SW1353 cells | knee joint | OA cell model | Degradation of extracellular matrix |
| |
| Up | —— | —— | Synovial fluid, Cartilage tissue | knee joint | OA cell model | Cell proliferation and apoptosis |
| |
| Up | —— | —— | Synovial tissue | knee joint | 0A rat model | Cell proliferation and apoptosis, inflammation |
| |
| Up | miR-20b | PTEN | Cartilage tissue | knee joint | OA mouse model | Cell proliferation and apoptosis, Degradation of extracellular matrix |
| |
| Up | miR-130a-3p | —— | Cartilage tissue | —— | OA human model | Cell proliferation and apoptosis, Cell autophagy |
| |
| Up | miR-17-5p | FUT2 | Cartilage tissue | knee joint | 0A rat model | Cell proliferation and apoptosis, Degradation of extracellular matrix |
| |
| LOC101928134 | Up | —— | IFNA1 | Synovial fluid, Cartilage tissue | knee joint | 0A rat model | Cell proliferation and apoptosis, Degradation of extracellular matrix |
|
| LINC00671 | Up | —— | Smurf2 | Cartilage tissue | knee joint | OA mouse model | Degradation of extracellular matrix |
|
| TM1P3 | Up | —— | —— | Cartilage tissue | knee joint | OA cell model | Degradation of extracellular matrix |
|
| GAS5 | Up | miR-144 | mTOR | Cartilage tissue | knee joint | 0A rat model | Cell proliferation and apoptosis |
|
| Up | miR-137 | —— | Blood, cartilage tissues | —— | OA cell model | Cell proliferation and apoptosis |
| |
| Up | miR-21 | —— | Cartilage tissue | knee joint | OA cell model | Cell proliferation and apoptosis |
| |
| SAMD14-4 | Up | —— | COL1A1, COL1A2 | Cartilage tissue | knee joint | OA cell model | inflammation |
|
| KLF3-AS1 | Up | miR-206 | GIT1 | Cartilage tissue | knee joint | OA mouse model | Cell proliferation and apoptosis |
|
| CTBP1-AS2 | Up | miR-130a | —— | Cartilage tissue, Synovial fluid | knee join、hip join | OA cell model | Cell proliferation and apoptosis |
|
| H19 | Up | miR-140-5p | —— | Cartilage tissue | knee joint | OA cell model | Degradation of extracellular matrix |
|
| Up | miR-675 | —— | Cartilage tissue | knee joint | OA cell model | Degradation of extracellular matrix |
| |
| Up | miR-106b-5p | TIMP2 | Cartilage tissue, Synovial fluid | knee joint | OA cell model | Degradation of extracellular matrix |
| |
| Up | miR-29a-3p | FOS | Astrocytes | —— | OA rat model | inflammation |
| |
| PART1 | Up | miR-373-3p | SOX4 | Cartilage tissue | —— | OA cell model | Cell proliferation and apoptosis, Degradation of extracellular matrix |
|
| LOXL1-AS1 | Up | miR-423-5p | KDM5C | Cartilage tissue | knee join, hip join | OA cell model | Cell proliferation and apoptosis |
|
| MALAT1 | Up | miR-145 | ADAMTS5 | Cartilage tissue | —— | OA cell model | Degradation of extracellular matrix |
|
| Up | miR-146a-PI3K | —— | Cartilage tissue | —— | OA rat model | Degradation of extracellular matrix |
| |
| TUG1 | Up | miR-195 | MMP-13 | Cartilage tissue | knee joint | OA cell model | Degradation of extracellular matrix |
|
| Up | miR-320c | MMP-13 | Cartilage tissue | knee joint | OA cell model | Degradation of extracellular matrix, Cell proliferation and apoptosis |
| |
| XIST | Up | miR-211 | CXCR4 | Cartilage tissue | knee joint | OA cell model | Cell proliferation and apoptosis |
|
| Up | miR-149-5p | DNMT3A | Cartilage tissue | knee joint | OA cell model | Degradation of extracellular matrix |
| |
| Up | miR-1277-5p | —— | Cartilage tissue | knee join, hip join | OA rat model | Degradation of extracellular matrix |
| |
| FOXD2-AS1 | Up | miR-27a-3p | TLR4 | Cartilage tissue | knee joint | OA cell model | Cell proliferation and apoptosis |
|
| Up | miR-206 | CCND1 | Cartilage tissue | knee joint | OA cell model | Cell proliferation and apoptosis |
| |
| NEAT1 | Up | miR-543 | PLA2G4A | Cartilage tissue | knee joint | OA cell model | Cell proliferation and apoptosis |
|
| Up | miR-16-5p | —— | ATDC5 | knee joint | OA cell model | Cell proliferation and apoptosis |
| |
| Up | miR-193a-3p | SOX5 | Cartilage tissue | knee joint | OA cell model | Degradation of extracellular matrix |
| |
| IGHCγ1 | Up | miR-6891-3p | TLR4 | PBMCs | —— | OA cell model | inflammation |
|
| LINC00511 | Up | miR-150-5p | SP1 | ATDC5 | —— | OA cell model | Cell proliferation and apoptosis |
|
| PVT1 | Up | miR-488-3p | —— | Cartilage tissue | knee joint | OA cell model | Cell proliferation and apoptosis |
|
| Up | miR-27b-3p | TRAF3 | Cartilage tissue | —— | OA cell model | inflammation |
| |
| Up | miR-26b | —— | Cartilage tissue | knee joint | OA cell model | Degradation of extracellular matrix |
| |
| Up | miR-149 | —— | Cartilage tissue | knee joint | OA cell model | inflammation |
| |
| Up | miR-211-3p | —— | SW982 cells, Chondrocytes | —— | OA rat model | Cell proliferation and apoptosis |
| |
| CASC19 | Up | miR-152-3p | DDX6 | Cartilage tissue | —— | OA cell model | inflammation |
|
| CHRF | Up | miR-146a | —— | ATDC5 | —— | OA cell model | inflammation |
|
| HOTTIP | Up | miR-663a | —— | Cartilage tissue | knee joint | OA cell model | Cell proliferation and apoptosis |
|
| Up | miR-455-3p | CCL3 | Chondrocytes, Bone marrow | knee join, hip join | OA cell model | Degradation of extracellular matrix |
| |
| DANCR | Up | miR-216a-5p | JAK2, STAT3 | Cartilage tissue | knee joint | OA cell model | Cell proliferation and apoptosis |
|
| Up | miR-1275 | MMP-13 | SFMSCs, Synovial fluid | —— | OA cell model | Cell proliferation and apoptosis |
| |
| Up | miR-577 | —— | Cartilage tissue | knee join, hip join | OA cell model | Cell proliferation and apoptosis |
| |
| TNFSF10 | Up | miR-376-3p | FGFR1 | Cartilage tissue | knee joint | OA cell model | Cell proliferation and apoptosis |
|
| ARFRP1 | Up | miR-15a-5p | TLR4 | Cartilage tissue | knee joint | OA cell model | inflammation |
|
| LINC00461 | Up | miR-30a-5p | —— | Cartilage tissue | —— | OA cell model | Cell proliferation and apoptosis |
|
| BLACAT1 | Up | miR-142-5p | —— | BMSCs, Bone marrow | —— | OA rat model | Cell proliferation and apoptosis |
|
| MCM3AP-AS1 | Up | miR-1423p | HMGB1 | Synovial fluid, chondrocyte | knee join, hip join | OA cell model | Cell proliferation and apoptosis |
|
| MCM3AP-AS1 | Down | miR-138-5p | SIRT1 | Cartilage tissue | knee joint | OA cell model | inflammation |
|
| PCAT-1 | Up | miR-27b-3p | —— | Cartilage tissue | knee join, hip join | OA cell model | Cell proliferation and apoptosis |
|
| PMS2L2 | Up | miR-203 | —— | ATDC5 | —— | OA cell model | inflammation |
|
| LINC01534 | Up | miR-140-5p | —— | Cartilage tissue | knee joint | OA cell model | inflammation |
|
| MIR22HG | Up | miR-9-3p | ADAMTS5 | Cartilage tissue | knee joint | OA cell model | Degradation of extracellular matrix |
|
| PCGEM1 | Up | miR-770 | —— | Synovial fluid | —— | OA mouse model | Cell proliferation and apoptosis |
|
| DILC | Down | —— | IL-6 | Blood, Synovial fluid | —— | OA cell model | inflammation |
|
| PACER | Down | —— | HOTAIR | Blood | —— | OA cell model | Cell proliferation and apoptosis |
|
| MIR4435-2HG | Down | —— | —— | Blood, Synovial fluid | knee joint | OA cell model | Cell proliferation and apoptosis |
|
| HAND2-AS1 | Down | —— | IL-6 | Blood, Synovial fluid | knee joint | OA cell model | inflammation |
|
| ANCR | Down | —— | TGF-β1 | Blood | —— | OA cell model | Cell proliferation and apoptosis |
|
| ROR | Down | —— | —— | Cartilage tissue | knee joint | OA cell model | Cell proliferation and apoptosis |
|
| FAS-AS1 | Down | —— | —— | Cartilage tissue | knee joint | OA cell model | Degradation of extracellular matrix |
|
| lncRNA-NR024118 | Down | —— | —— | ATDC5 | —— | OA mouse model | inflammation |
|
| FER1L4 | Down | —— | IL-6 | Blood, Synovial fluid | —— | OA cell model | inflammation |
|
| ZFAS1 | Down | —— | —— | Cartilage tissue | knee joint | OA cell model | Cell proliferation and apoptosis |
|
| MEG3 | Down | —— | VEGF | Cartilage tissue | knee joint | OA cell model | Degradation of extracellular matrix |
|
| Down | —— | TRIB2 | Synovial fluid | knee joint | OA cell model | Cell proliferation and apoptosis |
| |
| Down | miR-361-5p | FOXO1 | Cartilage tissue | knee joint | OA cell model | Cell proliferation and apoptosis |
| |
| Down | miR-16 | SMAD7 | Cartilage tissue | —— | OA rat model | Cell proliferation and apoptosis |
| |
| Down | miR-93 | TGFBR2 | Cartilage tissue | knee joint | OA rat model | Degradation of extracellular matrix |
| |
| MALAT-1 | Down | —— | —— | Cartilage tissue | knee joint | OA rat model | Cell proliferation and apoptosis |
|
| SNHG7 | Down | miR-34a-5p | SYVN1 | Cartilage tissue | knee joint | OA cell model | Cell proliferation and apoptosis |
|
| Down | miR-214-5p | PPARGC1B | Cartilage tissue | knee joint | OA cell model | inflammation |
| |
| SNHG9 | Down | miR-34a | —— | Cartilage tissue, Synovial fluid | knee joint | OA cell model | Cell proliferation and apoptosis |
|
| NKILA | Down | miR-145 | SP1 | Cartilage tissue | —— | OA cell model | Cell proliferation and apoptosis |
|
| SNHG5 | Down | miR-10a-5p | H3F3B | Cartilage tissue | knee joint | OA cell model | Cell proliferation and apoptosis |
|
| Down | miR-26a | SOX2 | Cartilage tissue | knee joint | OA cell model | Cell proliferation and apoptosis |
| |
| PART-1 | Down | miR-590-3p | TGFBR2/Smad3 | Cartilage tissue | knee join, hip join | OA cell model | Cell proliferation and apoptosis |
|
| OIP5-AS1 | Down | miR-29b-3p | PGRN | Cartilage tissue | knee joint | OA cell model | inflammation |
|
| Down | miR-30a-5p | —— | Cartilage tissue | —— | OA cell model | Cell proliferation and apoptosis |
| |
| DNM3OS | Down | miR-126 | CHON-001 | Cartilage tissue | knee joint | OA cell model | Cell proliferation and apoptosis | |
| LINC00623 | Down | miR-101 | HRAS | Cartilage tissue | knee joint | OA cell model | Cell proliferation and apoptosis |
|
| ATB | Down | miR-223 | —— | ATDC5 | —— | OA mouse model | inflammation |
|
| HOTAIRM1-1 | Down | miR-125b | BMPR2 | Cartilage tissue | knee joint | OA cell model | Cell proliferation and apoptosis |
|
| HULC | Down | miR-101 | —— | Cartilage tissue | knee joint | OA cell model | inflammation |
|
| SNHG15 | Down | miR-141-3p | BCL2L13 | Cartilage tissue | knee joint | OA rat model | Cell proliferation and apoptosis |
|
| LINC00662 | Down | miR-15b-5p | GPR120 | Cartilage tissue | knee joint | OA rat model | inflammation |
|
| LUADT1 | Down | miR-34a | SIRT1 | Synovial fluid, chondrocytes | knee join, hip join | OA cell model | Cell proliferation and apoptosis |
|
| UFC1 | Down | miR-34a | —— | Cartilage tissue | knee joint | OA cell model | Cell proliferation and apoptosis |
|
Abbreviations: PBMCs, peripheral blood mononuclear cells; MMP, metalloproteinases; WIF-1, Wnt inhibitory factor 1; FUT2, fucosyltransferase 2; KDM5C, lysine demethylase 5C; DNMT3A, DNA, methyltransferase 3A; SIRT1, silent information regulator-1; TRIB2, Tribbles homolog 2; TGFBR2, transforming growth factor β receptor type II; KLF4, Krüppel-like factor 4; PPARGC1B, PPARG, coactivator 1 beta; H3F3B, H3 histone family 3B; Smad3, SMAD, family member 3; PGRN=progranulin; DNM3OS, dynamin 3 opposite strand; HRAS, Harvey rat sarcoma viral oncogene homolog; BMPR2, bone morphogenetic protein receptor 2.
FIGURE 3Biological functions of circRNA: (A). Regulation of gene transcription: Elcircrna can interact with small nuclear ribonucleoproteins and bind to RNA polymerase II; (B). miRNA sponge: circRNA contains miRNA binding sites, which can block miRNA binding to mRNA and promote or inhibit the expression of related genes by sponging miRNA; (C). circRNAs bind to mRNA regulatory binding protein, which influences the stability of mRNA, and may change the splicing pattern of circRNA; (D). By being translated by ribosomes and encoding polypeptides, several circRNAs can play a role in regulating and controlling human physiological processes.
Functional characterization of the circRNAs in OA.
| CircRNA | Expression | Target genes | Related genes | Tissue/cell source | Region | Model | Functions | Reference |
|---|---|---|---|---|---|---|---|---|
| CircVCAN | Up | —— | —— | Cartilage tissue | —— | OA cell model | Cell proliferation and apoptosis |
|
| hsa_circ_0000448 | Up | —— | —— | Synovial tissues | Temporomandibular joint | OA cell model | Degradation of extracellular matrix |
|
| hsa_circ_0037658 | Up | —— | —— | Cartilage tissue | —— | OA cell model | Cell autophagy |
|
| hsa_circ_0032131 | Up | —— | —— | Blood | —— | OA cell model | Cell proliferation and apoptosis |
|
| Up | miR-502-5p | PRDX3 | Cartilage tissue | —— | OA rat model | Cell proliferation and apoptosis |
| |
| CircRNA.33186 | Up | miR-127-5p | —— | Cartilage tissue | knee joint | OA mouse model | Cell proliferation and apoptosis |
|
| CircRNA_0092516 | Up | miR-337-3p | PTEN | Cartilage tissue | knee joint | OA mouse model | Cell proliferation and apoptosis |
|
| CircGCN1L1 | Up | miR-330-3p | TNF-α | Synovial fluid | Temporomandibular joint | OA rat model | Cell proliferation and apoptosis |
|
| CircRNA-UBE2G1 | Up | miR-373 | HIF-1a | Cartilage tissue | knee joint | OA cell model | Cell proliferation and apoptosis |
|
| CircRNA HIPK3 | Up | miR-124 | SOX8 | Cartilage tissue | —— | OA cell model | Cell proliferation and apoptosis |
|
| CircTMBIM6 | Up | miR-27a | MMP13 | Cartilage tissue | knee joint | OA cell model | Degradation of extracellular matrix |
|
| CircPSM3 | Up | miRNA-296-5p | —— | Cartilage tissue | —— | OA cell model | Cell proliferation and apoptosis |
|
| hsa_circ_0005105 | Up | miR-26a | NAMPT | Cartilage tissue | —— | OA cell model | Degradation of extracellular matrix |
|
| CircRNA-CDR1as | Up | miRNA-641 | —— | Cartilage tissue | knee joint | OA cell model | Degradation of extracellular matrix |
|
| CircRNA Atp9b | Up | miR-138-5p | —— | Cartilage tissue | knee joint | OA mouse model | Degradation of extracellular matrix |
|
| Circ_0116061 | Up | miR-200b-3p | SMURF2 | Cartilage tissue | knee joint | OA cell model | Cell proliferation and apoptosis, inflammation |
|
| Circ-BRWD1 | Up | miR-1277 | TRAF6 | Cartilage tissue | knee joint | OA cell model | Cell proliferation and apoptosis, Degradation of extracellular matrix, inflammation |
|
| Circ-SPG11 | Up | miR-337-3p | ADAMTS5 | Cartilage tissue | knee joint | OA cell model | Cell proliferation and apoptosis, Degradation of extracellular matrix, inflammation |
|
| Circ_SLC39A8 | Up | miR-591 | IRAK3 | Cartilage tissue | knee joint | OA cell model | Cell proliferation and apoptosis, Degradation of extracellular matrix, inflammation |
|
| Circ-PRKCH | Up | miR-140-3p | ADAM10 | Cartilage tissue | knee joint | OA cell model | Degradation of extracellular matrix |
|
| CircCDH13 | Up | miR-296-3p | PTEN | Cartilage tissue | hip joint | OA mouse model | Cell proliferation and apoptosis, Degradation of extracellular matrix |
|
| Circ-IQGAP1 | Up | miR-671-5p | TCF4 | Cartilage tissue | knee joint, hip joint | OA cell model | Cell proliferation and apoptosis, Degradation of extracellular matrix, inflammation |
|
| Circ_0136,474 | Up | miR-127-5p | MMP-13 | Cartilage tissue | knee joint | OA cell model | Cell proliferation and apoptosis |
|
| Circ_RUNX2 | Up | —— | RUNX2 | Blood | —— | OA cell model | Degradation of extracellular matrix |
|
| CircRSU1 | Up | miR-93-5p | MAP3K8 | Cartilage tissue | knee joint | OA mouse model | Degradation of extracellular matrix |
|
| CircRNA3503 | Down | —— | —— | Synovial fluid | —— | OA cell model | Degradation of extracellular matrix |
|
| CircPDE4B | Down | —— | RIC8A, MID1 | Cartilage tissue | —— | OA mouse model | Degradation of extracellular matrix |
|
| CircSERPINE2 | Down | miR-1271 | —— | Cartilage tissue | —— | OA cell model | Degradation of extracellular matrix, Cell proliferation and apoptosis |
|
| Down | miR-495 | TGFBR2 | Cartilage tissue | knee joint | OA cell model | Cell proliferation and apoptosis |
| |
| CiRS-7 | Down | miR-7 | —— | Cartilage tissue | —— | OA rat model | Inflammation |
|
| Down | miR-7 | —— | Blood | —— | OA cell model | Cell proliferation and apoptosis |
| |
| CircCDK14 | Down | miR-125a-5p | Smad2 | Cartilage tissue | knee joint | 0A rabbit model | Cell proliferation and apoptosis |
|
| CircPDE4D | Down | miR-103a-3p | FGF18 | Cartilage tissue | knee joint | OA mouse model | Degradation of extracellular matrix |
|
| CircRNA_0001236 | Down | miR-3677-3p | Sox9 | Bone marrow, Cartilage tissue | —— | OA mouse model | Degradation of extracellular matrix |
|
| CircRNA-9119 | Down | miRNA-26a | PTEN | Cartilage tissue | —— | OA cell model | Cell proliferation and apoptosis |
|
| Hsa_circ_0005567 | Down | miR-495 | ATG14 | Cartilage tissue | —— | OA cell model | Cell autophagy and apoptosis |
|
| CircRNA-CER | Up | MiR-136 | MMP13 | —— | knee joint | OA cell model | Degradation of extracellular matrix |
|
| CircHYBID | Down | hsa-miR-29b-3p | TGF-β1 | Cartilage tissue | knee joint | OA cell model | Degradation of extracellular matrix |
|
| CircADAMTS6 | Down | miR-431-5p | —— | Cartilage tissue | —— | OA cell model | Cell proliferation and apoptosis |
|
| Hsa_circ_0045714 | Down | miR-193b | IGF1R | Cartilage tissue | knee joint | OA cell model | Cell proliferation and apoptosis |
|
| Circ_0020093 | Down | miR-23b | SPRY1 | Cartilage tissue | —— | OA cell model | Degradation of extracellular matrix |
|
| CircANKRD36 | Down | miR-599 | Casz1 | Cartilage tissue | —— | OA cell model | Cell proliferation and apoptosis |
|
| CircSLC7A2 | Down | miR-4498 | TIMP3 | Cartilage tissue | —— | OA mouse model | Degradation of extracellular matrix, Cell proliferation and apoptosis, inflammation |
|
Abbreviations: TNF-α, tumor necrosis factor-α; LEF1, lymphoid enhancer-binding factor 1; NAMPT, nicotinamide phosphoribosyltransferase; SMURF2, Smad ubiquitin regulatory factor 2; TRAF6, TNF, receptorassociated factor 6; ADAM10, a-disintegrin and metallopeptidase domain 10; PTEN, phosphatase and tensin homolog; MID1, midline 1; TGFBR2, transforming growth factor-β receptor 2; SPRY1, sprouty 1.
FIGURE 4lncRNA–miRNA–mRNA axis in OA. lncRNA can combine with miRNA to promote the expression of related target genes. PTEN = phosphatase and tensin homolog; FUT2 = fucosyltransferase 2; Timp2 = tissue inhibitor of metalloproteinase 2; KDM5C = lysine demethylase 5C; DNMT3A = DNA methyltransferase 3A; TLR4 = toll-like receptor 4; CCND1 = cyclin D1; KLF4 = Krüppel-like factor 4; SYVN1 = synoviolin 1; PPARGC1B = PPARG coactivator 1 beta; H3F3B = H3 histone family 3B; PGRN = progranulin; DNM3OS = dynamin 3 opposite strand; BMPR2 = bone morphogenetic protein receptor 2.
FIGURE 5circRNA–miRNA–mRNA axis in OA. circRNAs can combine with miRNAs to promote the expression of related target genes. (A) circRNAs that play a role in cell proliferation and apoptosis. (B) circRNAs that play a role in degradation of the extracellular matrix and apoptosis. (C) circRNAs that play a role in degradation of the extracellular matrix, cell proliferation, apoptosis, and inflammation. NAMPT = nicotinamide phosphoribosyltransferase; MMP13 = matrix metalloproteinase.