| Literature DB >> 34976001 |
Hanen Chelbi1, Refka Jelassi1,2, Sarra Belfkih1, Amor Ben Amor3, Nasreddine Saidi1, Hamza Ben Salah1,4, Nabiha Mzoughi1, Imen Ben Dhifallah5, Nadia Boujelben6,7, Radhia Ammi8, Aida Bouratbine1, Ines Zidi7, Karim Aoun1.
Abstract
Background and objectives: Human cytomegalovirus (HCMV) and genetic polymorphisms of the chemokine receptor 5 have been suggested as factors associated with the progression of colorectal cancer (CRC). The aim of the study was to evaluate the associations of both CCR5Δ32 genetic deletion and/or HCMV virus infection with CRC in Tunisia.Entities:
Keywords: CCR5Δ32; UL55, UL138 genes; colorectal cancer; human cytomegalovirus; nested PCR
Year: 2021 PMID: 34976001 PMCID: PMC8719653 DOI: 10.3389/fgene.2021.598635
Source DB: PubMed Journal: Front Genet ISSN: 1664-8021 Impact factor: 4.599
FIGURE 1Profile of the melting peaks generated by the amplification β-Globin gene by Q-PCR with: The curves in dark blue are the samples positive for β-Globin gene and the curves in light blue are the samples negative for β-Globin gene.
Clinical characteristics of patients with CRC and control groups.
| Variable | Cases | Controls | ||
|---|---|---|---|---|
| Tumoral tissues ( | Blood ( | Blood ( |
| |
| Age (mean ± SD) | 58 ± 10 | 58 ± 11.46 | 57.3 ± 10.2 | NS |
| Sexe male | 18 (45) | 42 (42) | 47 (66) | NS |
| Cancer site | ||||
| Colon (%) | 28 (70) | 54 (54) | — | — |
| Rectum (%) | 13 (32.5) | 35 (35) | — | — |
| Other (%) | 09 (22.5) | 10 (10) | — | — |
| TNM stage | ||||
| Satge I | 05 (12.5) | 09 (09) | — | — |
| Stage II | 12 (30) | 34 (34) | — | — |
| Stage III | 09 (22.5) | 47 (47) | — | — |
| Stage IV | 14 (35) | 10 (10) | — | — |
| Severity | ||||
| Stages I-II | 17 (42.5) | 47 (47) | — | — |
| Stages III-IV | 23 (63.5) | 63 (63) | — | — |
| Metastases | ||||
| Yes | 15 (37) | 20 (20) | — | — |
| No | 25 (63) | 67 (67) | — | — |
| Not available | 0 (0) | 13 (13) | — | — |
The age among two groups was compared using one-way ANOVA. NS:not significant.
CRC: colorectal cancer; NS:not significant; SD: standard deviation; N: number.
FIGURE 2electrophoretic profile of UL55 gene amplification by nested-PCR; (A): Electrophoretic profile of UL55 gene amplification using the first set of primers. A single band is corresponding to the expected size (150 bp).SM: 100 bp size marker, T −: negative control, 1–5: studied samples, T +: positive control (B): electrophoretic profile of UL55 gene amplification using the second set of primers. A single band is corresponding to the expected size of 100 bp. SM: 50 bp size marker, T −: negative control, 1–4: studied samples, 5: positive control.
FIGURE 3electrophoretic profile of UL138 gene amplification by nested-PCR: A single band corresponding to the expected size of 89 bp for stage 2.SM :100 bp size marker, NTC: Negative control; 1: positive sample; 2–4: studied samples.
Prevalence of HCMV in blood samples collected from CRC patients and controls.
| Cases ( | Control ( |
| OR | ||||
|---|---|---|---|---|---|---|---|
|
| % |
| % | ||||
| UL55 | Positive | 93 | 93 | 84 | 60 | — | — |
| Negative | 07 | 07 | 54 | 40 | p < 0.0001(3.82—20.50) | 8.85 | |
| UL138 | Positive | 98 | 98 | 138 | 98.5 | — | — |
| Negative | 02 | 02 | 00 | 00 | 0.7344 (0.09—5.12) | 0.71 | |
HCMV: Human Cytomegalovirus; CRC: colorectal cancer; CI: confidence interval; OR: odd ratio.
Prevalence of HCMV in both types of tissue.
| Tumoral tissue ( | Peri-tumoral tissue ( |
| OR | ||||
|---|---|---|---|---|---|---|---|
| UL55 | — | n | % | n | % | 0.29 (0.94-1.33) | 2.55 |
| — | Positive | 37 | 92.5 | 29 | 82.86 | — | — |
| — | Negative | 3 | 7.5 | 6 | 17.14 | — | — |
| UL138 | — | n | % | n | % | 0.46 (0.97-1.09) | 3.40 |
| — | Positive | 40 | 100 | 34 | 97.14 | — | — |
| — | Negative | 0 | 0 | 1 | 2.86 | — | — |
HCMV: Human Cytomegalovirus; UL: unique long gene; CI: confidence interval; OR: odd ratio.
FIGURE 4Detection of IgG and IgM antihuman cytomegalovirus (HCMV) in sera from colorectal cancer (CRC) and control patients. Sera were detected by enzyme-linked immunosorbent assay (ELISA) using anti-CMV IgG and IgM test kit. The median of IgG titers to HCMV in CRC patients and control patients were 1.96 versus 0.6710, while the IgM titers to HCMV were 0.019 versus 0.049. ***p = 0.0001, ***p = 0.0001.
FIGURE 5Electrophoretic profile of CCR5 gene containing the CCR5Δ32 deletion using PCR. A single band of 132 bp is corresponding to the size of the target sequence forthe studied samples.SM: 100 bp size, T−: negative control, 1–13: studied samples.
Hardy–Weinberg Equilibrium (HWE ) test for case and control groups.
| Case ( | Control ( | ||||||
|---|---|---|---|---|---|---|---|
|
| % |
|
| % |
| ||
| — | Genotypes | — | — | — | — | — | — |
| — | Wt/Wt | 98 | 98 | — | 135 | 97 | — |
| — | Wt/Δ32 | 2 | 2 | — | 05 | 03 | — |
| CCR5 WT/ Δ32 | Δ32/ Δ32 | 0 | 0 | 0.503 | 0 | 0 | 0.515 |
| — | allele | — | — | — | — | — | — |
| — | Δ32 | 2 | 2 | — | 04 | 4 | — |
| — | WT | 198 | 98 | — | 196 | 96 | — |
Exact test for HWE, uses mid-p values was performed because of low counts and rare allele.
study association of CCR5 Δ32 deletion with CRC: a case control study.
| Genotypes | Case ( | Control ( |
|
| |||
|---|---|---|---|---|---|---|---|
|
| % |
| % | ||||
| Dominance Δ32>WT | Wt/Wt | 98 | 98 | 135 | 97 | 0.7 | 1.8 |
| Wt/ Δ32+Δ32/ Δ32 | 02 | 02 | 05 | 03 | 0.37–9.25 | ||
| Coodominance WT = Δ32 | Wt/Wt | 98 | 98 | 135 | 97 | 0.4757 | — |
| Wt/Δ32 | 02 | 02 | 05 | 03 | — | — | |
| Δ32/ Δ32 | 0 | 0 | 0 | 0 | — | — | |
Fisher’s exact test was used because of lows sample.