| Literature DB >> 34970608 |
Olle Holmberg1,2, Tobias Lenz3, Valentin Koch4,5, Aseel Alyagoob3, Léa Utsch3, Andreas Rank3, Emina Sabic3, Masaru Seguchi3, Erion Xhepa3, Sebastian Kufner3, Salvatore Cassese3, Adnan Kastrati3,6, Carsten Marr1,4, Michael Joner3,6, Philipp Nicol3.
Abstract
Background: Optical coherence tomography is a powerful modality to assess atherosclerotic lesions, but detecting lesions in high-resolution OCT is challenging and requires expert knowledge. Deep-learning algorithms can be used to automatically identify atherosclerotic lesions, facilitating identification of patients at risk. We trained a deep-learning algorithm (DeepAD) with co-registered, annotated histopathology to predict atherosclerotic lesions in optical coherence tomography (OCT).Entities:
Keywords: artificial intelligence; atherosclerosis; deep learning; histopathology; intravascular imaging; optical coherence tomography
Year: 2021 PMID: 34970608 PMCID: PMC8713728 DOI: 10.3389/fcvm.2021.779807
Source DB: PubMed Journal: Front Cardiovasc Med ISSN: 2297-055X
Figure 1DeepAD for prediction of atherosclerotic lesions from OCT. (A) Two data sets were used for training DeepAD: 222 OCT frames from 51 patients with manual annotations based on clinical expertise, and 62 OCT frames from 7 patients with annotations based on co-registered histopathology. (B) DeepAD learned to accurately predict atherosclerotic lesions from OCT images and was evaluated on patients with histopathology-based annotations.
Histopathological data set (n = 62 histopathology images).
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| 6/62 | 45/62 | 11/62 | |||
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| 6/45 | 16/45 | ||||
| Plaque components | Foam cells | 0/6 | 15/45 | 8/11 | |
| Calcification | 0/6 | 27/45 | 4/11 | ||
| Necrotic core | 0/6 | 24/45 | 11/11 | ||
Main characteristics of the histopathological data set regarding presence of different plaque types (PIT, FA and TCFA) and plaque components (Foam cells, calcifications and necrotic core). Values are numbers of frames (percentage).
Clinical data set (n = 222 OCT frames).
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| 88/222 | 81/222 | 53/222 | ||
| Plaque components | Foam cells | 3/88 | 81/81 | 28/53 |
| Calcification | 4/88 | 4/81 | 53/53 | |
| Lipid pool | 2/88 | 25/81 | 16/53 | |
Main characteristics of the clinical data set regarding presence of different plaque types (fibrous plaque, lipid plaque and calcified plaque) and plaque components (Foam cells, calcifications and lipid pool). Values are numbers of frames (percentage).
Baseline characteristics of clinical data set.
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| 51 (100.0) | |
| Age (years) | 66.2 (±14.7) | |
| Gender | Male | 35/51 (68.6) |
| Female | 16/51 (31.4) | |
| CVRF | Arterial hypertension | 43/51 (84.3) |
| Hypercholesterolemia | 42/51 (82.4) | |
| Diabetes mellitus II | 25/51 /49.0) | |
| Smoker | 25/41 (49.0) | |
| CAD | 1V-CAD | 5/51 (9.8) |
| 2V-CAD | 12/51 (23.5) | |
| 3V-CAD | 34/51 (66.7) | |
| Vessel imaged by OCT | LCA | 7/51 (13.7) |
| LAD | 20/51 (39.2) | |
| LCx | 12/51 (23.5) | |
| RCA | 12/51 (23.5) | |
| Indication for OCT imaging | Unclear angiographic findings | 2/51 (3.9) |
| Guidance of PCI | 43/51 (84.3) | |
| Follow-up after PCI | 6/51 (11.8) | |
| Clinical presentation | Silent ischemia | 8/51 (15.7) |
| Stable AP | 31/51 (60.8) | |
| Unstable AP | 4 /51 (7.8) | |
| ACS | 6/51 (11.8) | |
| Asymptomatic follow-up | 2/51 (3.9) | |
Values are mean ± SD or n/N (%).
Figure 2Lesion segmentation vs. a-line classification. (A) Lesion segmentation: Atherosclerotic lesions are annotated in OCT frames with or without histopathological information (blue = lumen, gray= vessel wall). Performance of the segmentation approach is evaluated via IOU, measuring the overlap between the labeled “ground truth” and the “prediction” of the algorithm. IOU ranges between 0 and 1 (B) a-line classification. Based on the manual annotation, 360 a-line predictions are evaluated per OCT frame regarding the presence or absence of atherosclerotic lesions and can be summarized in a confusion matrix.
Figure 3Examples from the histopathology data set and the clinical data set. (A) Histopathology of two atherosclerotic lesions (fibroatheroma with necrotic core covered by fibrous cap) with manual annotation (marked by red dashed line) and co-registered OCT frames. (B) Three examples of atherosclerotic lesions in clinical OCT images (marked by red dashed line), based on clinical judgement without underlying histopathology. Left: fibrotic plaque, middle: lipid plaque, right: calcified plaque.
Figure 4DeepAD predicts atherosclerotic lesion tissue on unseen test patients with good performance. (A) Intersection over union (IOU) scores across test sets for atherosclerotic tissue predictions from the OCT only and histopathology-based algorithm (DeepAD), here visualized for every test sample as a dot in the violin plot. (B) Examples of predicted atherosclerotic lesions from OCT and histopathology based algorithm: good performance prediction (top, 0.75 IOU, almost all of the region annotated in “ground truth” is predicted by DeepAD), moderate performance (middle, 0.66 IOU, most of the region annotated in “ground truth” is predicted by DeepAD) and low performance (bottom, 0.29 IOU, false-positive prediction of a region from 6-9 o'clock which was not annotated in “ground truth”).
Figure 5Prediction of calcification by DeepAD. Examples for “good” (upper row), “intermediate” (middle row), and “low” (lower row) prediction of calcification using DeepAD (dark blue = lesion, green=calcification, light blue = lumen). Note that with an average IOU = 0.34, most calcification is localized correctly, however with incomplete detection.
Figure 6(A) Application of DeepAD for lesion detection in clinical cases. 3D reconstruction of OCT pullback visualizes algorithm-based lesions detection (red). Representative cross-sections of healthy (green) and diseased (red lines) areas are shown with respective lesion detection by the DeepAD. (B) Subdifferentiation of calcified lesions by DeepAD. Representative OCT frames and corresponding predictions by DeepAD of 3 clinical cases from the clinical cohort (see Table 4). Case 9 mostly has fibrolipidic lesions without any calcifications while case 10 shows heavily calcified lesions (note that DeepAD is able to detect and differentiate circumferential and spotty calcifications). Case 11 shows almost no atherosclerotic lesions.
Application of DeepAD in clinical cohort (n=11 cases) and comparison with manual analysis.
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| 1 | 60 | 68 | 40 | 32 | 88 | 90.9 | 83.9 | 86.2 |
| 2 | 44 | 38 | 56 | 62 | 93 | 88.0 | 96.6 | 91.3 |
| 3 | 20 | 5 | 80 | 95 | 83 | 83.0 | 83.3 | 83.1 |
| 4 | 1 | 0 | 99 | 100 | 91 | 98.5 | n.a. | 98.5 |
| 5 | 52 | 42 | 48 | 58 | 69 | 65.1 | 74.5 | 69.1 |
| 6 | 20 | 9 | 80 | 91 | 86 | 86.4 | 81.8 | 86.0 |
| 7 | 46 | 46 | 54 | 54 | 93 | 92.9 | 92.9 | 92.9 |
| 8 | 18 | 20 | 82 | 80 | 89 | 93.8 | 67.5 | 88.6 |
| 9 | 18 | 8 | 82 | 92 | 87 | 87.5 | 83.3 | 87.2 |
| 10 | 21 | 0 | 79 | 100 | 79 | 79.2 | n.a. | 79.2 |
| 11 | 75 | 87 | 25 | 13 | 82 | 87.0 | 81.6 | 82.1 |
| Total/ | 34 | 29 | 66 | 71 | 88 | 86.6 | 82.9 | 85.8 |