Literature DB >> 34969051

Correction: The sockeye salmon genome, transcriptome, and analyses identifying population defining regions of the genome.

Kris A Christensen, Eric B Rondeau, David R Minkley, Dionne Sakhrani, Carlo A Biagi, Anne-Marie Flores, Ruth E Withler, Scott A Pavey, Terry D Beacham, Theresa Godin, Eric B Taylor, Michael A Russello, Robert H Devlin, Ben F Koop.   

Abstract

[This corrects the article DOI: 10.1371/journal.pone.0240935.].

Entities:  

Year:  2021        PMID: 34969051      PMCID: PMC8717986          DOI: 10.1371/journal.pone.0262189

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


This article [1] cites a PLOS ONE article that was retracted on February 9, 2021 [2, 3] because the sample used for genome analysis was found to have been misidentified. The genomic assembly reported in [2] is still available at GenBank, but it has been relabelled as an unclassified species in the Salvelinus genus, or Salvelinus sp. (GenBank accession: GCF_002910315.2). The draft genome reported in [2] was one of six reference species used to confirm synteny placement of scaffolds during assembly of the sockeye salmon genome in this 2020 article [1]. The authors and an Academic Editor concluded that the retraction [3] and the species identity of the genome reported in [2] do not impact the validity or reliability of this article’s [1] results and conclusions as multiple species and multiple lines of evidence were used to confirm synteny assessments. The retracted article [2] was also cited as a source for methods used in the 2020 article [1]. As a result, the authors have provided the relevant Python scripts via GitHub and the Data Availability statement for this article [1] is as follows: Raw data has been deposited to the National Center for Biotechnology Information (NCBI) under BioProject PRJNA530256 (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA530256/). Custom scripts and sample information can be found in supplemental files and via GitHub: https://github.com/KrisChristensen/OrthologyBetweenSpecies.
  3 in total

1.  The Arctic charr (Salvelinus alpinus) genome and transcriptome assembly.

Authors:  Kris A Christensen; Eric B Rondeau; David R Minkley; Jong S Leong; Cameron M Nugent; Roy G Danzmann; Moira M Ferguson; Agnieszka Stadnik; Robert H Devlin; Robin Muzzerall; Michael Edwards; William S Davidson; Ben F Koop
Journal:  PLoS One       Date:  2018-09-13       Impact factor: 3.240

2.  Retraction: The Arctic charr (Salvelinus alpinus) genome and transcriptome assembly.

Authors:  Kris A Christensen; Eric B Rondeau; David R Minkley; Jong S Leong; Cameron M Nugent; Roy G Danzmann; Moira M Ferguson; Agnieszka Stadnik; Robert H Devlin; Robin Muzzerall; Michael Edwards; William S Davidson; Ben F Koop
Journal:  PLoS One       Date:  2021-02-09       Impact factor: 3.240

3.  The sockeye salmon genome, transcriptome, and analyses identifying population defining regions of the genome.

Authors:  Kris A Christensen; Eric B Rondeau; David R Minkley; Dionne Sakhrani; Carlo A Biagi; Anne-Marie Flores; Ruth E Withler; Scott A Pavey; Terry D Beacham; Theresa Godin; Eric B Taylor; Michael A Russello; Robert H Devlin; Ben F Koop
Journal:  PLoS One       Date:  2020-10-29       Impact factor: 3.240

  3 in total

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