Literature DB >> 34968947

The active kinome: The modern view of how active protein kinase networks fit in biological research.

Khaled Alganem1, Abdul-Rizaq Hamoud1, Justin F Creeden1, Nicholas D Henkel1, Ali S Imami1, Alex W Joyce1, William G Ryan V1, Jacob B Rethman1, Rammohan Shukla1, Sinead M O'Donovan1, Jarek Meller2, Robert McCullumsmith3.   

Abstract

Biological regulatory networks are dynamic, intertwined, and complex systems making them challenging to study. While quantitative measurements of transcripts and proteins are key to investigate the state of a biological system, they do not inform the "active" state of regulatory networks. In consideration of that fact, "functional" proteomics assessments are needed to decipher active regulatory processes. Phosphorylation, a key post-translation modification, is a reversible regulatory mechanism that controls the functional state of proteins. Recent advancements of high-throughput protein kinase activity profiling platforms allow for a broad assessment of protein kinase networks in complex biological systems. In conjunction with sophisticated computational modeling techniques, these profiling platforms provide datasets that inform the active state of regulatory systems in disease models and highlight potential drug targets. Taken together, system-wide profiling of protein kinase activity has become a critical component of modern molecular biology research and presents a promising avenue for drug discovery.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Bioinformatics; PamChip; PamStation; Post-translational modification; Protein array

Mesh:

Substances:

Year:  2021        PMID: 34968947      PMCID: PMC9438800          DOI: 10.1016/j.coph.2021.11.007

Source DB:  PubMed          Journal:  Curr Opin Pharmacol        ISSN: 1471-4892            Impact factor:   4.768


  74 in total

Review 1.  The protein kinase complement of the human genome.

Authors:  G Manning; D B Whyte; R Martinez; T Hunter; S Sudarsanam
Journal:  Science       Date:  2002-12-06       Impact factor: 47.728

Review 2.  Phosphoproteins.

Authors:  G Taborsky
Journal:  Adv Protein Chem       Date:  1974

Review 3.  Reverse phase protein arrays: mapping the path towards personalized medicine.

Authors:  Rosa I Gallagher; Virginia Espina
Journal:  Mol Diagn Ther       Date:  2014-12       Impact factor: 4.074

4.  The effect of Bruton's tyrosine kinase (BTK) inhibitors on collagen-induced platelet aggregation, BTK, and tyrosine kinase expressed in hepatocellular carcinoma (TEC).

Authors:  Jun Chen; Taisei Kinoshita; Tarikere Gururaja; Juthamas Sukbuntherng; Danelle James; Daniel Lu; Jennifer Whang; Matthias Versele; Betty Y Chang
Journal:  Eur J Haematol       Date:  2018-07-20       Impact factor: 2.997

5.  Kinome Profiling to Predict Sensitivity to MAPK Inhibition in Melanoma and to Provide New Insights into Intrinsic and Acquired Mechanism of Resistance Short Title: Sensitivity Prediction to MAPK Inhibitors in Melanoma.

Authors:  Mohamad Krayem; Philippe Aftimos; Ahmad Najem; Tim van den Hooven; Adriënne van den Berg; Liesbeth Hovestad-Bijl; Rik de Wijn; Riet Hilhorst; Rob Ruijtenbeek; Malak Sabbah; Joseph Kerger; Ahmad Awada; Fabrice Journe; Ghanem E Ghanem
Journal:  Cancers (Basel)       Date:  2020-02-22       Impact factor: 6.639

6.  Positive- and negative-feedback regulations coordinate the dynamic behavior of the Ras-Raf-MEK-ERK signal transduction pathway.

Authors:  Sung-Young Shin; Oliver Rath; Sang-Mok Choo; Frances Fee; Brian McFerran; Walter Kolch; Kwang-Hyun Cho
Journal:  J Cell Sci       Date:  2009-02-01       Impact factor: 5.285

7.  A Library of Phosphoproteomic and Chromatin Signatures for Characterizing Cellular Responses to Drug Perturbations.

Authors:  Lev Litichevskiy; Ryan Peckner; Jennifer G Abelin; Jacob K Asiedu; Amanda L Creech; John F Davis; Desiree Davison; Caitlin M Dunning; Jarrett D Egertson; Shawn Egri; Joshua Gould; Tak Ko; Sarah A Johnson; David L Lahr; Daniel Lam; Zihan Liu; Nicholas J Lyons; Xiaodong Lu; Brendan X MacLean; Alison E Mungenast; Adam Officer; Ted E Natoli; Malvina Papanastasiou; Jinal Patel; Vagisha Sharma; Courtney Toder; Andrew A Tubelli; Jennie Z Young; Steven A Carr; Todd R Golub; Aravind Subramanian; Michael J MacCoss; Li-Huei Tsai; Jacob D Jaffe
Journal:  Cell Syst       Date:  2018-04-11       Impact factor: 10.304

8.  Kinase Interaction Network Expands Functional and Disease Roles of Human Kinases.

Authors:  Marija Buljan; Rodolfo Ciuffa; Audrey van Drogen; Anton Vichalkovski; Martin Mehnert; George Rosenberger; Sohyon Lee; Markku Varjosalo; Lucia Espona Pernas; Vincent Spegg; Berend Snijder; Ruedi Aebersold; Matthias Gstaiger
Journal:  Mol Cell       Date:  2020-07-23       Impact factor: 17.970

9.  Sangivamycin and its derivatives inhibit Haspin-Histone H3-survivin signaling and induce pancreatic cancer cell death.

Authors:  Ligia I Bastea; Laeticia M A Hollant; Heike R Döppler; Elizabeth M Reid; Peter Storz
Journal:  Sci Rep       Date:  2019-11-12       Impact factor: 4.379

View more
  1 in total

1.  Subcellular partitioning of protein kinase activity revealed by functional kinome profiling.

Authors:  Lauren Wegman-Points; Khaled Alganem; Ali Sajid Imami; Victoria Mathis; Justin Fortune Creeden; Robert McCullumsmith; Li-Lian Yuan
Journal:  Sci Rep       Date:  2022-10-15       Impact factor: 4.996

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.