| Literature DB >> 34967592 |
Thuan Duc Lao1, Minh Trong Quang1, Thuy Ai Huyen Le1.
Abstract
OBJECTIVE: MicroRNAs (miRNAs) are key post-transcriptional regulators of protein translation in humans. They have an essential role in various cancers, including nasopharyngeal carcinoma (NPC). The abnormal expression of miR-21 has been proven to be associated with various types of cancers, including NPC, through its targets. This study provides a systematic view of the roles of miR-21 and its network of targets (hsa-miR-21-3p, hsa-miR-21-5p) that are associated with nasopharyngeal carcinoma.Entities:
Keywords: Nasopharyngeal carcinoma; miR-21; miRNA; target gene
Mesh:
Substances:
Year: 2021 PMID: 34967592 PMCID: PMC9080362 DOI: 10.31557/APJCP.2021.22.12.4075
Source DB: PubMed Journal: Asian Pac J Cancer Prev ISSN: 1513-7368
Figure 1Sequence of miR-21. (A) primary transcript of the miR-21. Lower letter: 5’ upstream sequence, and 3’ upstream sequence; Capital letter: sequence of 72-bps-length stem-loop precursor miR-21 (pre-miR-21); Seed of miR-12 is framed; (B) Stem-loop structure of pre-miR-21; (C) hsa-miR-21 is conserved over the mammalian evolution. Note: hsa: Homo sapiens; mmu: Mus musculus; rno: Rattus norvegicus; ssc: Sus scrofa; mml: Macaca mulatta; ptr: Pan troglodytes; ppy: Pongo pygmaeus; mmu: Mama mulatta; cfa: Canis familiaris; bta: Bos Taurus
Catalog of Targets of hsa-mir-21-3p/5p related NPC
| Mechanism | Targets |
|---|---|
| hsa-mir-21-3p | |
| Cancer progression | ALCAM↑, CSF1R↑, HNRNPA2B1↑, SMAD4↓, MDM4↑, PDE4D↑, SOX4↑, CLDN1↑, NUAK1, BCL2L11↑, UBE4B↑, ZNF609↑, RSF1↑, MTDH↑, MIB1↑, IRX2↑, SRSF2↑, LUC7L3↓, CTLA4↑. |
| Tumor promoter | UBE4B↑. |
| Cell division effector | RASAL2↓, SOX4↑, MTDH↑, MIB1↑. |
| Migration inhibition | RASAL2↓, NFATC2↑, ZNF609↑. |
| Tumor suppressor | CYLD↓, FOXO4↓, TSC1↑, RASAL2↓, RBMS3↓. |
| Proliferation enhancer | ALCAM↑, CSF1R↑, HNRNPA2B1↑, MDM4↑, FOXO4↓, PDE4D↑, SOX4↑, CLDN1↑, RASAL2↓, NUAK1↑, UBE4B↑, ZNF609↑, RBMS3↓, RSF1↑, MTDH↑, LIN28B↑, MIB1↑, IRX2↑. |
| Other function* | TAP1↑, TBP↑, IL20RB↑. |
| hsa-mir-21-5p | |
| Cancer progression | BCAT1↑, CDH6↑, FBXO11↑, FGD4↑, JAG1↑, LRP6↑, METTL3↑, RAB27B↑, SATB1↑, SOX2↑, SOX5↑, STAT3↑, TBL1XR1↑, TIAM1↑, TRPM7↑, ZNF609↑, PDCD4↓, BCL2↑, PTEN↓, CDK2AP1↓, FASLG↑, FOXO1↑, KLF12↑, MAP3K2↑, NETO2↑, SGK3↑, SKP2↑. |
| Tumor promoter | AGO2↑, ALDH1A1↑, CDK6↓, ELF2↑, SOX2↑, SOX5↑; STAT3↑, STYK1↑. |
| Cell division effector | RASAL2↓, TOP2A↑. |
| Migration inhibition | CHL1↓, DICER1↑, E2F3↑, RAB27B↑, SMAD7↓, SOX7↓, TET1↓, ZNF609↑, RASAL2↓, MAPK10↓, SGK3↑. |
| Tumor suppressors | KLF6↓, PDCD4↓, RASSF6↑, RECK↓, SERPINB5↓, SMAD7↓, TET1↓, TGFBR2↓, TGFBR3↓, TIMP3↓, PTEN↓, RASAL2↓, FOXO1↑, SOCS6↓. |
| Proliferation enhancer | BCAT1↑, CDK6↓, ELF2↑, HIPK3↑, SOX2↑, SOX5↑, SOX7↓, STYK1↑, TBX2↑, TLR4↑, TRPM7↑, ZNF609↑, PTEN↓, BCL2↑, RASAL2↓, CDK2AP1↓, MAPK10, SGK3↑. |
| Other function* | C7↑, CCL20↑, CTCF↑, EDNRB↑, FOXP1↑, GFPT1↑, IL1B↑, MALT1↑, MSH2↓, PHF20↑, RTN4↑, SP3↑, TAF1V, YAP1↑. |
*Note: Other functions are related to promote hypermethylation, response of immune, lytic of EBV, etc.; ↑ upregulation, ↓ downregulation.
Catalog of miR-21-3p Target Genes that are Functional Associated with NPC
| Gene | Associated Function |
|---|---|
|
| Role in growth of various tumors and characteristics of metastasis-associated tumor cells |
|
| Upon activation of the receptor, regulating the proliferation and differentiation of cells of the mononuclear phagocytic lineage (Yang et al., 2012). |
|
| Correlated with critical biogenesis of mRNAs by affecting pre-mRNA processing and other roles of mRNAs. HNRNPA2B1 was the downstream target of miR-146b-5p and SOX2-OT regulated NPC tumorigenesis via miR-146b-5p/HNRNPA2B1 pathway (Zhang and Li, 2019). |
|
| Regulated p53 activity, MDM4 is one of the key negative regulators of p53 and its overexpression or amplification contributes to carcinogenesis by inhibiting p53 tumor suppressor activity (ZHANG et al., 2012). |
|
| Plays an important role in miR-421-mediated biological functions, MDM4 is one of the key negative regulators of p53 and its overexpression or amplification contributes to carcinogenesis by inhibiting p53 tumor suppressor activity (Chen et al., 2013). |
|
| Affecting the EGFR/PI3K/AKT signaling pathway (XU et al., 2014). |
|
| Role in controlling cell fate and differentiation, in embryonic development (Shi et al., 2015) . |
|
| As a tumor and metastasis suppressor. RASAL2 inhibited the proliferation and metastasis capability of NPC cells (Wang et al., 2015). |
|
| Response to cellular hypoxia and nutrient starvation (Liu et al., 2018b). |
|
| Regulates the proteasome-dependent degradation of certain substrates and involved in several biological processes. To determine the mechanism by which silencing of UBE4B inhibits tumor cell growth, the apoptosis assay was performed (Weng et al., 2019). |
|
| Regulated Sp1 (Zhu et al., 2019). |
|
| Role in cell proliferation; cell cycle regulation; apoptosis (Chen et al., 2012). |
|
| Transcriptional regulation, DNA replication and cell cycle progression via regulating the nucleosome remodeling. activated NF-κB pathway and promoted the expression NF-κB dependent genes involved in cell cycle and apoptosis including Survivin (Liu et al., 2017a). |
|
| Role in NF-kB, PI3K/Akt and Wnt/β-catenin signalling pathway,repression of miR-98 leads to elevated MTDH (Tan et al., 2017). |
|
| Marker of cell proliferation (Emara et al., 2016). |
|
| Promoting oncogenesis and progression of malignant tumors (Si et al., 2018). |
|
| Interacts with the isoenzymes of creatine kinase, tight junction proteins ZO1, ZO2, ZO3 and proteins containing the PDZ domain, to pass signals inside and outside cells and maintain the physical barrier function of tight junctions (Wu et al., 2018b). |
Catalog of miR-21-5p target Genes that are Functional Associated with NPC
| Gene | Function |
|---|---|
|
| Silencing BCAT1 expression blocks NPC cell proliferation and the G1/S transition. In addition, BCAT1 knockdown cells demonstrated reduced proliferation and decreased cell migration and invasion abilities. BCAT1 overexpression may be an important early event in NPC occurrence and maintain throughout NPC progression (Zhou et al., 2013). |
|
| Bcl-2 plays an important role in the pathogenesis of NPC by regulating apoptosis (Sheu et al., 1997; Su et al., 2016). |
|
| Low CDK2AP1 expression is common and associated with adverse prognosticators, conferring tumour aggressiveness through cycle cycle, cell growth or apoptosis cellular processes in NPC patients (Wu et al., 2012). |
|
| miR-143 regulates NPC cell proliferation by downregulating CDK6. CDK6 can exert its full tumor-promoting function by enhancing proliferation and stimulating angiogenesis (Kollmann et al., 2013). |
|
| ELF2 was highly expressed in NPC tissues by IHC, and over-expressed ELF2 promoted NPC cell proliferation (Chung et al., 2016; Liu et al., 2017b). |
|
| miR-3188 direct targeting of mTOR is mediated by FOXO1 suppression of p-PI3K/p-AKT/c-JUN signaling (Zhao et al., 2016). |
|
| miR-27a-3p promoted 5–8 F growth and mobility, an effect that at least partially depended on Mapk10 (Li and Luo, 2017). |
|
| PDCD4 also plays a role in suppressing tumor intravasation, and inhibition of PDCD4 can be achieved by regulating u-PAR gene expression (Leupold et al., 2007). In addition, TGFβ/PDCD4/AP-1 pathway is associated with NPC development and progression (Ma et al., 2017). |
|
| By directly targeting PTEN, miR-144-3p enhance the proliferation and invasion of NPC cells and suppressed apoptosis, which improves PI3K-Akt signaling (Song et al., 2019). |
|
| The expression of Rab27B is associated with the radio-resistance of NPC cell lines, which is mediated by miR-20a-5p (Huang et al., 2017). |
|
| Down-regulated expression of RASAL2 increased proliferation, migration and invasion capability via EMT induction in nasopharyngeal carcinoma cells; RASAL2 inhibited the proliferation and metastasis capability of NPC cells (Wang et al., 2015). |
|
| SGK3 silencing could suppress proliferation, survival and migration of NPC cells (Chen et al., 2019). |
|
| SMAD7 is an inhibitory role in the TGF-β signaling pathway (Luo et al., 2014); the TGF-β signaling pathway is one of the important signaling pathways in tumor cell EMT, which is an important cause of distant metastasis of malignant tumor cells (Xu et al., 2009). |
|
| SOX2 plays a vital role in the progression of multiple tumors through various mechanisms. For example, SOX2 activated lncRNA ANRIL by binding their promoters in nasopharyngeal carcinoma (Wu et al., 2018b); SOX2 was also shown to regulate Lin28a to activate the AKT signaling pathway there by promoting the proliferation and maintain the self-renewal of GmGSCs-I-SB (Ma et al., 2016); SOX2 regulates nasopharyngeal carcinoma cell prolifera-tion and tumor growth through PI3K/AKT signaling (Tang et al., 2018). |
|
| SOX-5 exerts its effects on NPC progression by suppressing other oncosuppressor genes, especially SPARC (Huang et al., 2007). |
|
| MiR-494-3p could promote the proliferation, migration, and invasion of NPC cells by targeting Sox7 (He et al., 2018). |
|
| EBV-induced STAT3 activation is required for and contributes directly to NPC cell proliferation and invasion (Lui et al., 2009). |
|
| STYK1 promotes Warburg effect through PI3K/AKT signaling and predicts a poor prognosis (Zhao et al., 2017). |
|
| TET1 suppressed the growth of NPC cells, induced apoptosis, arrested cell division in G0/G1 phase, and inhibited cell migration and invasion. TET1 decreased the expression of nuclear β-catenin and downstream target genes. Furthermore, TET1 could cause Wnt antagonists (DACT2, SFRP2) promoter demethylation and restore its expression in NPC cells (Fan et al., 2018). |
|
| TRPM7 is a potential regulator of cell proliferation in NPC, through signal transducer and activator of transcription 3 (STAT3)-mediated signaling pathway and other anti-apoptotic factors (Qin et al., 2016). |
|
| ZNF609 promotes the proliferation and enhances the metastatic ability of NPC cells by absorbing microRNA-150-5p and upregulating Sp1 (Zhu et al., 2019). |
Figure 2Target Genes Network Interaction between NPC Pathogenesis and (A) hsa-miR-21-3p Target Genes; (B) hsa-miR-21-5p Target Genes
Illustrated Interactions among the Target Genes Using Gene Mania Online Tools
| Targets of | Co-expression | Co-localization | Pathway | Predicted | Physical interactions | Genetic interactions |
|---|---|---|---|---|---|---|
| hsa-miR-21-3p | 68.54% | 9.44% | 7.98% | 5.42% | 4.73% | 3.90% |
| hsa-miR-21-5p | 53.92% | 16.50% | 6.11% | 6.21% | 13.87% | 3.38% |
Note: Co-expression shows that the genes are expressed together across different experimental conditions; Co-localization refers to the fact that the genes are expressed inside the same tissue or location; Pathways interaction means the protein of the genes are involved in the same reaction in a common pathway; Predicted are functions of the orthologous genes interaction obtained from a different organism; Genetic interactions means altering expression of one gene affects the expression of the other; Physical interaction means that product interact in a protein interaction study; Shared protein domain means that proteins produced by the gene are part of the same protein, enzyme or complex.