Literature DB >> 34963771

The ISOTILT software for discovering cooperative rigid-unit rotations in networks of interconnected rigid units.

Branton J Campbell1, Harold T Stokes1, Tyler B Averett1, Shae Machlus1, Christopher J Yost1.   

Abstract

A user-friendly web-based software tool called 'ISOTILT' is introduced for detecting cooperative rigid-unit modes (RUMs) in networks of interconnected rigid units (e.g. molecules, clusters or polyhedral units). This tool implements a recently described algorithm in which symmetry-mode patterns of pivot-atom rotation and displacement vectors are used to construct a linear system of equations whose null space consists entirely of RUMs. The symmetry modes are first separated into independent symmetry-mode blocks and the set of equations for each block is solved separately by singular value decomposition. ISOTILT is the newest member of the ISOTROPY Software Suite. Here, it is shown how to prepare structural and symmetry-mode information for use in ISOTILT, how to use each of ISOTILT's input fields and options, and how to use and interpret ISOTILT output. © Branton J. Campbell et al. 2021.

Entities:  

Keywords:  ISOTILT; group representation theory; rigid-unit modes; singular value decomposition; symmetry modes

Year:  2021        PMID: 34963771      PMCID: PMC8662972          DOI: 10.1107/S1600576721009353

Source DB:  PubMed          Journal:  J Appl Crystallogr        ISSN: 0021-8898            Impact factor:   3.304


  8 in total

1.  Prediction of the crystal structures of perovskites using the software program SPuDS.

Authors:  M W Lufaso; P M Woodward
Journal:  Acta Crystallogr B       Date:  2001-11-29

2.  Octahedral tilting in cation-ordered perovskites--a group-theoretical analysis.

Authors:  Christopher J Howard; Harold T Stokes
Journal:  Acta Crystallogr B       Date:  2004-11-11

3.  Octahedral tilting in the tungsten bronzes.

Authors:  Thomas A Whittle; Siegbert Schmid; Christopher J Howard
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2015-05-29

4.  Flexibility of network materials and the Rigid Unit Mode model: a personal perspective.

Authors:  Martin T Dove
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2019-07-15       Impact factor: 4.226

5.  Rigid units revisited.

Authors:  Anthony E Phillips
Journal:  Acta Crystallogr A Found Adv       Date:  2018-09-01       Impact factor: 2.290

6.  An algebraic approach to cooperative rotations in networks of interconnected rigid units.

Authors:  Branton Campbell; Christopher J Howard; Tyler B Averett; Thomas A Whittle; Siegbert Schmid; Shae Machlus; Christopher Yost; Harold T Stokes
Journal:  Acta Crystallogr A Found Adv       Date:  2018-08-22       Impact factor: 2.290

7.  Tilting structures in spinels.

Authors:  V M Talanov; V B Shirokov
Journal:  Acta Crystallogr A       Date:  2012-08-15       Impact factor: 2.290

8.  Unified approach for determining tetragonal tungsten bronze crystal structures.

Authors:  M Smirnov; P Saint-Grégoire
Journal:  Acta Crystallogr A Found Adv       Date:  2014-04-01       Impact factor: 2.290

  8 in total

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