| Literature DB >> 34961053 |
Ramesh Palakurthi1, Veera Jayalakshmi2, Yogesh Kumar3, Pawan Kulwal4, Mohammad Yasin5, Nandkumar Surendra Kute4, Chinchole Laxuman6, Sharanabasappa Yeri6, Anilkumar Vemula1, Abhishek Rathore1, Srinivasan Samineni1, Khela Ram Soren3, Biswajit Mondal3, Girish Prasad Dixit3, Chellapilla Bharadwaj7, Sushil K Chaturvedi3,8, Pooran M Gaur1, Manish Roorkiwal1, Mahendar Thudi1,9, Narendra P Singh3, Rajeev K Varshney1,10.
Abstract
The Translational Chickpea Genomics Consortium (TCGC) was set up to increase the production and productivity of chickpea (Cicer arietinum L.). It represents research institutes from six major chickpea growing states (Madhya Pradesh, Maharashtra, Andhra Pradesh, Telangana, Karnataka and Uttar Pradesh) of India. The TCGC team has been engaged in deploying modern genomics approaches in breeding and popularizing improved varieties in farmers' fields across the states. Using marker-assisted backcrossing, introgression lines with enhanced drought tolerance and fusarium wilt resistance have been developed in the genetic background of 10 elite varieties of chickpea. Multi-location evaluation of 100 improved lines (70 desi and 30 kabuli) during 2016-2017 and 2018-2019 enabled the identification of top performing desi and kabuli lines. In total, 909 Farmer Participatory Varietal Selection trials were conducted in 158 villages in 16 districts of the five states, during 2017-2018, 2018-2019, and 2019-2020, involving 16 improved varieties. New molecular breeding lines developed in different genetic backgrounds are potential candidates for national trials under the ICAR-All India Coordinated Research Project on Chickpea. The comprehensive efforts of TCGC resulted in the development and adoption of high-yielding varieties that will increase chickpea productivity and the profitability of chickpea growing farmers.Entities:
Keywords: Fusarium wilt; chickpea; drought; farmer participatory varietal selection; marker assisted backcross; multi-location trials
Year: 2021 PMID: 34961053 PMCID: PMC8703834 DOI: 10.3390/plants10122583
Source DB: PubMed Journal: Plants (Basel) ISSN: 2223-7747
Figure 1Marker-assisted backcrossing was adopted for (a) drought tolerance and (b) fusarium wilt resistance using two recurrent parents from each center. ICC 4958 was used to introgress “QTL-hotspot” harbouring QTLs for drought tolerance related traits and Super Annigeri 1 was used as donor to introgress FW resistance in elite chickpea cultivars.
The SNP panels used to select true hybrids.
| Intertek ID | SNP ID | Trait | Sequence * |
|---|---|---|---|
| snpCA0001 | CKAM2210 | Drought | TTAAACTCACTTACCCTCTTTCCTTTCCATTTCCTTTCTTTCAAAATTCTCCTATATCCT[G/T]CTAATACAGATACTTTGCAACCCATTTTTTTTGTCAACAAAGTGTTATTGGGTGAGTTCA |
| snpCA0022 | CKAM2227 | Drought | CGAGGCCCAAATCCAAAACCGGATTCAAATTCATTTTAAATATCCGGTTAAAATCATATG[A/G]TTATAATTTGGTTTATTTATAAACCGGTTGGATAACCACTTATGTTTTATATTTGGATTT |
| snpCA0023 | CKAM2228 | Drought | CATCTGAAGATTATGTGCAGCTTAAGGTGTTGGCGGCAATTCAAGGGGACGCTAGTGTTT[C/G]TAAGGATGACAAAATTGAGCATTTGTTCTTTTCCTTAATGTTTTTTCAAAAACTCTCAAT |
| snpCA0004 | CKAM2179 | Drought | ATGTCTTCGGCTTCCAGATTTGTGTTTGGTGACATGACCGAAGAAAGCTTGAAATGAGCT[G/T]ATAGTGAAGAGCTCACTGCCTTTGATTCACACATATTGAATCTATTTAGAACCTTTCCAA |
| snpCA0006 | CKAM2182 | Drought | AACCACATGAAGAAAATAAATTATGTAAAATGTGTTGTTTCTTCGAATCAACTATGGTAT[C/T]GAGGCTATTCTGGATATCGAAGGGACATAATGAAAGAGAGAGTAGTGGCTTCGAAATGCG |
| snpCA0021 | CKAM2226 | Drought | CGCTATTAAGTACAAAAAATTGTCAAATAGCGGTTATAGCAATCTATAGCGTTGTTGCTT[A/T]GAGGAATATAAATAAACCACTATTTTTCACAATCTGCGATTCACAAAATTGGTATGTATG |
| snpCA0018 | CKAM2223 | Drought | TGAACAAAAACTTCTACGTGATCAGTTTGTCATATTTCACAAAAAAAAAAAAAAGGAATA[A/T]ATGCAATATATGCGGCTCAATTGGATGTTGTAACCATGGATTCTATTGATTAGTGGTCAA |
| snpCA0166 | FW2_30366103 | Fusarium wilt | TTCTATTATATTTTGATACTGTGGAGAATCATAGTCAAATACAATTGATA[C/A]ATACAACTTCAATTGGCCATAGAGGTCAGAGACTTCAAAAACTTTGATGT |
| snpCA0168 | FW2_30366146 | Fusarium wilt | AAATACAATTGATACATACAACTTCAATTGGCCATAGAGGTCAGAGACTT[C/A]AAAAACTTTGATGTCGCAGCTCACATCACTATCACAATCACAATCACAAT |
* SNPs highlighted in bold are targeted loci for marker development.
Summary of FPVS trials conducted during 2017–2018, 2018–2019 and 2019–2020 seasons.
| State | Center | District | Variety | Number of FPVS Trials | Total FPVS | ||
|---|---|---|---|---|---|---|---|
| 2017–2018 | 2018–2019 | 2019–2020 | |||||
| Andhra Pradesh | RARS-Nandyal | Anantapur, Kurnool and Prakasam |
| 30 | 90 | 90 | 210 |
| Karnataka | ARS-Kalaburagi | Bijapur, Dharwad, Gadag and Kalaburagi | 20 | 70 | 51 | 141 | |
| Madhya Pradesh | RAKCA-Sehore | Indore, Sehore and Ujjain | 30 | 90 | 90 | 210 | |
| Maharashtra | MPKV-Rahuri | Ahmednagar, Pune and Solapur | 30 | 98 | 76 | 204 | |
| Uttar Pradesh | ICAR-IIPR, Kanpur | Jalaun, Mahoba and Fatehpur | JG 14, | 25 | 93 | 116 | 234 |
Varieties in bold are best performing lines preferred by farmers.
Combined analysis of variance for grain yield based on multi-location trials of 100 elite lines (70 desi and 30 kabuli) conducted during cropping seasons 2016–2017 and 2018–2019.
| Effect | Desi Lines | Kabuli Lines |
|---|---|---|
| Variance Components | Variance Components | |
| Environment | 37.94 ** | 52.98 ** |
| Replication (Environment) | 0.37 ** | 0 |
| Block (Environment × Replication) | 0.004 * | 0 |
| Genotype | 0.96 * | 0.73 |
| Environment × Genotype | 8.76 ** | 15.93 ** |
| Residual | 13.96 | 25.28 |
* = significant at p < 0.05; ** = significant at p < 0.01.
Figure 2GGE biplots of (a) 70 desi elite lines evaluated in five locations and (b) 30 kabuli elite breeding lines evaluated in three locations for yield (kg/ha) during crop seasons 2016–2017 and 2018–2019. The Average Environment Axis (AEA) or Average Environment Coordination (AEC) abscissa (in blue) is the single arrowed line, which passes through the origin of the biplot and through the hypothetical average environment, denoted by the circle near (Rahuri_18 and Nandyal_17 (Desi line biplot) and Kalaburgi_18 (Kabuli lines biplot). The direction of the arrowhead on the AEA points to higher mean values for grain yield. PC1 and PC2 are the first and second principal components, respectively. Desi and kabuli lines with stable yield performance are circled in red and their genotype names are indicated below the GGE plots.
High-yielding (kg/ha) desi and kabuli lines with stable performance in multi-location trials conducted during 2016–2017 and 2018–2019.
| Desi Lines during 2016–2017 | Andhra | Karnataka | Madhya | Maharashtra |
|---|---|---|---|---|
| JG 2016-1614 | √ | √ | ||
| IPC 2012-98 | √ | √ | ||
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| ICCX-060010-F3-BP-P17-BP-BP-BP-BP | √ | √ | ||
| IPCK 2013-174 | √ | √ | ||
| SAGL 152225 | √ | |||
| SAGL 152289 | √ | |||
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| IPC 2015-105 | √ | √ | ||
| IPC 2015-120 | √ | √ | ||
| SAGL 152317 | √ | √ | ||
| JG 2016-1614 | √ | √ | ||
| JG 2016-634958 | √ | √ | ||
| JG 2016-921814 | √ | √ | ||
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| IPCK 2014-98 | √ | √ | ||
| SAGL 152289 | √ | √ | ||
| ICCX-060010-F3-BP-P6-BP-BP-BP-BP | √ | √ | ||
√ = High-yielding lines.
Mean grain yield (kg/ha) of select chickpea cultivars in FPVS trials conducted in five states of India during cropping seasons 2017–2018 2018–2019 and 2019–2020.
| State | Year | Variety | Kurnool | Prakasam | Anantapur | Mean |
|---|---|---|---|---|---|---|
|
| 2017–2018 | NBeG 3 | 686 | 413 | 492 | 530 |
| NBeG 47 | 679 | 445 | 491 | 538 | ||
| NBeG 49 | 857 | 488 | 561 | 635 | ||
| 2018–2019 | NBeG 49 | 1518 | 1040 | 1326 | 1295 | |
| 2019–2020 | NBeG 49 | 1810 | 1679 | 1606 | 1699 | |
| NBeG 119 | 1716 | 1833 | 1161 | 1503 | ||
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| 2017–2018 | GBM 2 | 1565 | 1270 | 1016 | 1284 |
| BGD 103 | 1490 | 1395 | 1232 | 1372 | ||
| MNK 1 | 1105 | 1195 | 650 | 983 | ||
| 2018–2019 | GBM 2 | 1763 | 1628 | - | 1696 | |
| 2019–2020 | GBM 2 | 1795 | 1521 | - | 1658 | |
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| 2017–2018 | RVG 202 | 1854 | 1852 | 2014 | 1907 |
| RVG 203 | 1886 | 1830 | 1864 | 1860 | ||
| RVGK 101 | 1429 | 1359 | 1737 | 1508 | ||
| RVGK 102 | - | 1165 | 1537 | 1351 | ||
| 2019–2020 | RVG 205 | 1476 | 1212 | 1528 | 1405 | |
| RVG 203 | 1965 | 1741 | 1610 | 1772 | ||
| RVG 202 | 2080 | 2150 | 2085 | 2105 | ||
| RVG 111 | 1548 | 1450 | 1654 | 1551 | ||
| RVKG 101 | 1450 | 1633 | 1700 | 1594 | ||
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| 2017–2018 | Kripa | 315 | 320 | 509 | 381 |
| Phule Vikram | 1380 | 1720 | 1658 | 1586 | ||
| RVG 202 | 1211 | 1785 | 1809 | 1602 | ||
| 2018–2019 | Kripa | 1169 | 875 | - | 1022 | |
| Phule Vikram | 1688 | 2000 | 1222 | 1637 | ||
| RVG 202 | 1495 | 2062 | 1521 | 1693 | ||
| RVG 203 | 1637 | 2015 | 1384 | 1679 | ||
| 2019–2020 | Phule Vikram | 1746 | 1298 | 987 | 1344 | |
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| 2017–2018 | Shubhra | 850 | 1700 | - | 1275 |
| RVG 202 | 1715 | 350 | - | 1033 | ||
| 2018–2019 | RVG 202 | 1846 | 938 | 1401 | 1395 | |
| Shubhra | 3484 | 1853 | 1608 | 2315 | ||
| JG 14 | 2388 | 1556 | 1392 | 1779 | ||
| Ujjawal | 3718 | 2085 | 1529 | 2444 | ||
| 2019–2020 | RVG 202 | 650 | 869 | 1209 | 909 | |
| RVG 203 | 629 | 610 | 1325 | 855 | ||
| JG 14 | 608 | 786 | 1548 | 980 |
Combined analysis of variance (F-value) for grain yield based on FPVS trials in centers in the respective states.
| Effect | Andhra Pradesh (Nandyal) | Karnataka | Madhya Pradesh (Sehore) | Maharashtra (Rahuri) | Maharashtra (Rahuri) | Uttar Pradesh (Kanpur) | Uttar Pradesh (Kanpur) |
|---|---|---|---|---|---|---|---|
| District | 2.1 | 9.50 ** | 2.02 | 0.81 | 0.79 | 3.3 | 6.77 ** |
| Variety | 7.26 ** | 89.79 ** | 27.47 ** | 0.08 | 0.02 | 3.67 | 0.26 |
| District × Variety | 1.75 | 36.26 ** | 2 | 0.59 | 0.21 | 1.29 | 0.29 |
| Residual | 0.25 | 0.52 | 1.57 | 10.78 | 7.47 | 14.87 | 14.98 |
** = significant at p < 0.01.
Figure 3GGE biplot showing significant genotype × environment interaction (GEI) for grain yield in Karnataka during 2017–2018. Dharwad and Kalaburagi were identified as the most discriminating environments.
Figure 4Farmer preferred varieties identified through FPVS trials conducted in different chickpea growing states. The best performing lines were (a) NBeG 49 in Andhra Pradesh; (b) GBM 2 in Karnataka; (c) RVG 202 in Madhya Pradesh; (d) Phule Vikram and RVG 202 in Maharashtra and (e) RVG 202 and Shubhra (IPCK 2002-29) in Uttar Pradesh.