| Literature DB >> 34957161 |
Fan Yang1, Chi Peng2, Liwei Peng3, Jian Wang3, Yuejun Li1, Weixin Li3.
Abstract
Background: Traumatic brain injury-induced coagulopathy (TBI-IC), is a disease with poor prognosis and increased mortality rate.Entities:
Keywords: TBI-IC; external validation; machine learning; model interpretation; traumatic brain injury-induced coagulopathy
Year: 2021 PMID: 34957161 PMCID: PMC8703138 DOI: 10.3389/fmed.2021.792689
Source DB: PubMed Journal: Front Med (Lausanne) ISSN: 2296-858X
Figure 1Overview of the methods used for data extraction, training, and testing. ICU, intensive care unit; MIMIC-IV, Medical Information Mart for Intensive Care-IV; eICU-CRD, eICU Collaborative Research Database; TBI, traumatic brain injury; ML, machine learning; NNET, artificial neural network; NB, naïve bayes; GBM, gradient boosting machine; Ada, adapting boosting; RF, random forest; BT, bagged trees; XGB, eXtreme Gradient Boosting.
Baseline characteristics of the MIMIC-IV cohorts.
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| Demographics | |||
| Age (y), median [Q1, Q3] | 67.00 (52.00, 80.00) | 66.00 (48.00, 82.00) | 0.809 |
| Male, | 317 (62.65) | 343 (69.57) | 0.025 |
| Race, | |||
| Black | 24 (4.87) | 28 (5.53) | |
| White | 294 (59.63) | 304 (60.08) | |
| Hispanic | 14 (2.84) | 16 (3.16) | |
| Asian | 15 (3.04) | 10 (1.98) | |
| Others | 146 (29.61) | 148 (29.25) | |
| BMI (kg/m2), median [Q1, Q3] | 26.25 (23.03, 29.80) | 26.12 (23.10, 30.10) | 0.914 |
| Family history of stroke, | 19 (3.85) | 5 (0.99) | 0.006 |
| Coexisting disorders, | |||
| Myocardial infarction | 69 (14.00) | 23 (4.55) | <0.001 |
| Congestive heart failure | 122 (24.75) | 44 (8.70) | <0.001 |
| Peripheral vascular disease | 39 (7.91) | 20 (3.95) | 0.012 |
| Cerebrovascular disease | 98 (19.88) | 75 (14.82) | 0.043 |
| Dementia | 22 (4.46) | 45 (8.89) | 0.008 |
| Chronic pulmonary disease | 75 (15.21) | 61 (12.06) | 0.173 |
| Rheumatic disease | 11 (2.23) | 5 (0.99) | 0.189 |
| Peptic ulcer disease | 12 (2.43) | 5 (0.99) | 0.128 |
| Diabetes | 108 (21.91) | 122 (24.11) | 0.452 |
| Paraplegia | 47 (9.53) | 62 (12.25) | 0.202 |
| Renal disease | 73 (14.81) | 42 (8.30) | 0.002 |
| Malignant cancer | 36 (7.30) | 10 (1.98) | <0.001 |
| Severe liver disease | 23 (4.67) | 0 (0.00) | <0.001 |
| Metastatic solid tumor | 10 (2.03) | 2 (0.40) | 0.038 |
| AIDS | 2 (0.41) | 2 (0.40) | 1.000 |
| CCI, median [Q1, Q3] | 5.00 (3.00, 7.00) | 4.00 (2.00, 6.00) | <0.001 |
| Vital signs (1st 24h) | |||
| Temperature (°C), median [Q1, Q3] | 37.10 (36.70, 37.50) | 37.20 (36.90, 37.52) | 0.017 |
| MAP (mmHg), median [Q1, Q3] | 79.00 (73.00, 86.00) | 81.00 (76.00, 88.00) | <0.001 |
| Heart rate (min), median [Q1, Q3] | 86.00 (76.00, 99.00) | 84.00 (73.00, 95.00) | 0.004 |
| Respiratory rate (min), median [Q1, Q3] | 19.00 (17.00, 22.00) | 18.00 (16.00, 20.00) | <0.001 |
| Laboratory findings (1st 24h) | |||
| RBC (109/L), median [Q1, Q3] | 3.40 (3.00, 3.80) | 3.80 (3.30, 4.20) | <0.001 |
| WBC (× 109/L), median [Q1, Q3] | 11.60 (8.33, 14.80) | 12.30 (9.50, 15.00) | 0.029 |
| HGB (g/dL), median [Q1, Q3] | 11.00 (9.00, 12.00) | 12.00 (10.00, 13.00) | <0.001 |
| PLT (× 109/L), median [Q1, Q3] | 166.50 (119.00, 224.75) | 219.00 (178.00, 265.00) | <0.001 |
| RDW (%), median [Q1, Q3] | 17.20 (14.50, 47.80) | 15.50 (13.60, 44.98) | <0.001 |
| HCT (%), median [Q1, Q3] | 31.90 (27.83, 35.77) | 35.10 (31.20, 38.40) | <0.001 |
| APTT (s), median [Q1, Q3] | 31.40 (27.70, 38.20) | 27.60 (25.70, 30.17) | <0.001 |
| PT (s), median [Q1, Q3] | 15.40 (13.40, 17.90) | 12.90 (12.00, 13.80) | <0.001 |
| INR, median [Q1, Q3] | 1.40 (1.20, 1.60) | 1.20 (1.10, 1.20) | <0.001 |
| pH, median [Q1, Q3] | 7.39 (7.34, 7.43) | 7.40 (7.37, 7.44) | 0.001 |
| Bicarbonate (mmol/L), median [Q1, Q3] | 22.50 (20.00, 25.00) | 23.30 (21.00, 25.00) | 0.002 |
| Lactate (mmol/L), median [Q1, Q3] | 1.80 (1.20, 2.60) | 1.50 (1.00, 2.12) | <0.001 |
| BE (mEq/L), median [Q1, Q3] | −0.71 (-3.00, 1.00) | 0.00 (-1.50, 1.50) | <0.001 |
| Anion gap (mmol/L), median [Q1, Q3] | 14.80 (12.80, 16.70) | 14.50 (13.00, 16.30) | 0.467 |
| PaO2 (mmHg), median [Q1, Q3] | 141.48 (104.91, 191.65) | 148.33 (103.25, 193.69) | 0.560 |
| PaCO2 (mmHg), median [Q1, Q3] | 38.33 (35.00, 42.67) | 38.46 (35.00, 43.00) | 0.784 |
| FiO2 (%), median [Q1, Q3] | 50.00 (42.50, 60.00) | 50.00 (40.00, 57.50) | 0.025 |
| PaO2/FiO2, median [Q1, Q3] | 286.29 (208.26, 372.00) | 313.72 (227.25, 413.23) | 0.008 |
| Chloride (mmol/L), median [Q1, Q3] | 105.50 (102.00, 109.30) | 104.50 (101.00, 108.00) | 0.001 |
| Calcium (mmol/L), median [Q1, Q3] | 8.30 (7.80, 8.70) | 8.50 (8.00, 8.90) | <0.001 |
| Sodium, (mmol/L), median [Q1, Q3] | 140.00 (137.00, 142.80) | 140.00 (137.00, 141.80) | 0.049 |
| Potassium (mmol/L), median [Q1, Q3] | 4.10 (3.80, 4.40) | 4.00 (3.80, 4.30) | 0.197 |
| Glucose (mmol/L), median [Q1, Q3] | 141.00 (116.00, 166.00) | 133.00 (114.50, 159.00) | 0.035 |
| CRE (mg/dL), median [Q1, Q3] | 1.00 (0.70, 1.30) | 0.90 (0.70, 1.10) | <0.001 |
| BUN (mg/dL), median [Q1, Q3] | 17.50 (12.30, 26.70) | 15.00 (11.00, 20.00) | <0.001 |
| Urine output (mL), median [Q1, Q3] | 1668.00 (1078.00, 2462.50) | 1875.00 (1250.00, 2673.75) | 0.018 |
| Type of injury, | |||
| Subarachnoid hemorrhage | 175 (35.50) | 162 (32.02) | 0.273 |
| Cranial extradural hematoma | 18 (3.65) | 16 (3.16) | 0.801 |
| Cerebral contusion | 74 (15.01) | 124 (24.51) | <0.001 |
| Therapy strategy (1st 24h), | |||
| MV | 436 (88.44) | 401 (79.25) | <0.001 |
| Blood Transfusion | 29 (5.88) | 5 (0.99) | <0.001 |
| Hyperosmolar therapy | 46 (9.33) | 63 (12.45) | 0.139 |
| Neurosurgical intervention | 146 (29.61) | 153 (30.24) | 0.884 |
| Scoring system | |||
| GCS | 8.00 (5.00, 10.00) | 8.00 (7.00, 10.00) | 0.001 |
| SOFA | 7.00 (5.00, 10.00) | 5.00 (4.00, 6.00) | <0.001 |
| APSIII | 39.00 (31.00, 48.00) | 35.00 (27.00, 43.00) | <0.001 |
MIMIC-IV, Medical Information Mart for Intensive Care-IV; BMI, body mass index; AIDS, acquired immunodeficiency syndrome; CCI, Charlson comorbidity index; MAP, mean artery pressure; RBC, red blood cell; WBC, white blood cell; HGB, hemoglobin; PLT, platelet; RDW, red blood cell volume distribution width; RDW, red blood cell volume distribution width; HCT, hematocrit; APTT, activated partial thromboplastin time; PT, prothrombin time; INR, international normalized ratio; BE, buffer excess; CRE, creatinine; BUN, blood urea nitrogen; MV, mechanical ventilation; GCS, Glasgow coma score; SOFA, sepsis related organ failure assessment; APSIII acute physiology score III; Blood Transfusion: defined as RBC, Plasma, PLT product administered; Hyperosmolar therapy: defined as HTS or mannitol; Neurosurgical intervention: defined as craniectomy or ventriculostomy.
Figure 2Association between the number of variables allowed to be considered at each split and the prediction accuracy in the REF algorithm. REF, recursive feature elimination.
Figure 3Area under the curve of receiver operating characteristic curve by machine learning models in the validation cohort. ROC, receiver operate characteristics; AUC, area under the curve; NNET, artificial neural network; NB, naïve bayes; GBM, gradient boosting machine; Ada, adapting boosting; RF, random forest; BT, bagged trees; XGB, eXtreme Gradient Boosting.
Prediction performance of the machine learning models in the testing set.
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| NNET | 0.851 | 0.733 | 0.932 | 0.882 | 0.835 | 0.910 | (0.886, 0.930) |
| NB | 0.814 | 0.586 | 0.971 | 0.933 | 0.772 | 0.867 | (0.839, 0.891) |
| GBM | 0.848 | 0.800 | 0.881 | 0.823 | 0.864 | 0.920 | (0.897, 0.939) |
| Ada | 0.855 | 0.730 | 0.942 | 0.897 | 0.834 | 0.924 | (0.902, 0.943) |
| RF | 0.862 | 0.797 | 0.908 | 0.857 | 0.866 | 0.915 | (0.892, 0.935) |
| BT | 0.835 | 0.747 | 0.896 | 0.832 | 0.837 | 0.881 | (0.854, 0.904) |
| XGB | 0.859 | 0.744 | 0.939 | 0.895 | 0.841 | 0.917 | (0.894, 0.936) |
PPV, positive predictive values; NPV, negative predictive values, AUC, area under the curve; CI, confidence interval; NNET, artificial neural network; NB, naïve bayes; GBM, gradient boosting machine; Ada, adapting boosting; RF, random forest; BT, bagged trees; XGB, eXtreme Gradient Boosting.
Figure 4Decision curve analysis. The net benefits of the Ada and XGB are relatively larger over a range of threshold probability values compared with those of other ML models. Ada, adapting boosting; XGB, eXtreme Gradient Boosting; ML, machine learning. NNET, arti?cial neural network; NB, naïve bayes; GBM, gradient boosting machine; RF, random forest; BT, bagged trees.
Figure 5Variable importance in seven different ML models. ML, machine learning; NNET, artificial neural network; NB, naïve bayes; GBM, gradient boosting machine; Ada, adapting boosting; RF, random forest; BT, bagged trees; XGB, eXtreme Gradient Boosting; INR, international normalized ratio; PT, prothrombin time; SOFA, sepsis related organ failure assessment; APTT, activated partial thromboplastin time; PLT, platelet; HCT, hematocrit; RBC, red blood cell; HGB, hemoglobin; BUN, blood urea nitrogen; RDW, red blood cell volume distribution width; CRE, creatinine.
Figure 6Examples of website usage. Entering the input value determined the coagulopathy and displayed how each value contributed to the prediction. PLT, platelet; INR, international normalized ratio; PT, prothrombin time; APTT, activated partial thromboplastin time; SOFA, sepsis related organ failure assessment; RDW, red blood cell volume distribution width; RBC, red blood cell; CRE, creatinine; BUN, blood urea nitrogen; HCT, hematocrit; HGB, hemoglobin.