| Literature DB >> 34955882 |
Yedam Yoo1, Aroli Marcellinus1, Da Un Jeong1, Ki-Suk Kim2, Ki Moo Lim1.
Abstract
As part of the Comprehensive in vitro Proarrhythmia Assay initiative, methodologies for predicting the occurrence of drug-induced torsade de pointes via computer simulations have been developed and verified recently. However, their predictive performance still requires improvement. Herein, we propose an artificial neural networks (ANN) model that uses nine multiple input features, considering the action potential morphology, calcium transient morphology, and charge features to further improve the performance of drug toxicity evaluation. The voltage clamp experimental data for 28 drugs were augmented to 2,000 data entries using an uncertainty quantification technique. By applying these data to the modified O'Hara Rudy in silico model, nine features (dVm/dtmax, APresting, APD90, APD50, Caresting, CaD90, CaD50, qNet, and qInward) were calculated. These nine features were used as inputs to an ANN model to classify drug toxicity into high-risk, intermediate-risk, and low-risk groups. The model was trained with data from 12 drugs and tested using the data of the remaining 16 drugs. The proposed ANN model demonstrated an AUC of 0.92 in the high-risk group, 0.83 in the intermediate-risk group, and 0.98 in the low-risk group. This was higher than the classification performance of the method proposed in previous studies.Entities:
Keywords: artificial neural network (ANN); comprehensive in vitro proarrhythmic assay (CiPA); in silico; proarrhythmicity; toxicology classification
Year: 2021 PMID: 34955882 PMCID: PMC8703011 DOI: 10.3389/fphys.2021.761691
Source DB: PubMed Journal: Front Physiol ISSN: 1664-042X Impact factor: 4.566
Twenty- eight drugs selected by the CiPA research group into high, intermediate, and low risk levels according to the possibility of causing Tdp (Li et al., 2019). Twelve drugs were used during the machine learning training and sixteen drugs were used during testing.
| Used \risk level | High | Intermediate | Low |
| TRAINING | Quinidine | Cisapride | Verapamil |
| Sotalol | Terfenadine | Ranolazine | |
| Dofetilide | Chlorpromazine | Diltiazem | |
| Bepridil | Ondansetrom | Mexiletine | |
| TESTING | Disopyramide | Clarithromycin | Metoprolol |
| Ibutilide | Clozapine | Nifedipine | |
| Vandetanib | Domperidone | Nitrendipine | |
| Azimilide | Droperidol | Tamoxifen | |
| Pimozide | Loratadine | ||
| Risperidone | |||
| Astemizole |
FIGURE 1Schematic diagram of an artificial neural network model consisting of an input layer with 9 nodes, a hidden layer with 5 nodes, and an output layer with 3 nodes. dVm/dtmax is the maximum slope when the membrane potential is depolarized in the shape of the action potential; APD90 is the duration between the depolarization point and the repolarization point 90% below the maximum amplitude in the shape of the action potential; APD50 is the duration between the depolarization and repolarization points 50% below the maximum amplitude in action potential shape; APresting is the resting membrane potential; CaD90 is the duration between 90% or less of the maximum amplitude during the transient period of intracellular calcium; CaD50 is the duration between 50% or less of the maximum amplitude during the intracellular calcium transient; Caresting is the diastolic concentration of intracellular calcium; qNet is the total amount of ion charges that have moved through the six ion channels (INaL, ICaL, IKr, IKs, IK1, Ito) during the action potential duration; qInward is the average of the ratio between the drug reaction and the steady state of charges directed to the cell through the ICaL and INaL ion channels during the action potential period.
FIGURE 2Histogram representing the frequency of AUCs obtained after 10,000 tests. (A), high risk group; (B), medium risk group; (C), low risk group.
In this study, a comparison of the accuracy of prediction of Tdp-induced risk levels when using an artificial neural network (ANN) model and a logistic regression model proposed by the Li group was performed (Li et al., 2019).
| Model | Logistic regression | ANN |
| AUC of High risk group | 0.86 (0.81–0.9) | 0.92 (0.85–0.96) |
| AUC of Intermediate risk group | — | 0.83 (0.73–0.91) |
| AUC of Low risk group | 0.86 (0.82–0.90) | 0.98 (0.91–1) |
| Likelihood + of High risk group | 5 (3.33–12.5) | 5,000 (4,000–6,000) |
| Likelihood − of High risk group | 0.556 (0.278–0.588) | 0.5 (0.40–0.59) |
| Likelihood + of Intermediate risk group | — | 2.249 (1.80–2.25) |
| Likelihood − of Intermediate risk group | — | 0.18e-3 (0.18e-3–0.26) |
| Likelihood + of Low risk group | 2.01 (1.61–2.84) | 6,000 (4.39–6,000) |
| Likelihood − of Low risk group | 0.118 (1.8e-06–0.284) | 0.4 (0.4–0.66) |