| Literature DB >> 34950118 |
Zhimao Mai1,2, Mai Ye1,3, Youshao Wang1,2, Swee Yeok Foong4, Lin Wang1,2, Fulin Sun1,2,5, Hao Cheng1,2.
Abstract
In this study, 16S high-throughput and metagenomic sequencing analyses were employed to explore the changes in microbial community and function with the succession of mangroves (Sonneratia alba, Rhizophora apiculata, and Bruguiera parviflora) along the Merbok river estuary in Malaysia. The sediments of the three mangroves harbored their own unique dominant microbial taxa, whereas R. apiculata exhibited the highest microbial diversity. In general, Gammaproteobacteria, Actinobacteria, Alphaproteobacteria, Deltaproteobacteria, and Anaerolineae were the dominant microbial classes, but their abundances varied significantly among the three mangroves. Principal coordinates and redundancy analyses revealed that the specificity of the microbial community was highly correlated with mangrove populations and environmental factors. The results further showed that R. apiculata exhibited the highest carbon-related metabolism, coinciding with the highest organic carbon and microbial diversity. In addition, specific microbial taxa, such as Desulfobacterales and Rhizobiales, contributed the highest functional activities related to carbon metabolism, prokaryote carbon fixation, and methane metabolism. The present results provide a comprehensive understanding of the adaptations and functions of microbes in relation to environmental transition and mangrove succession in intertidal regions. High microbial diversity and carbon metabolism in R. apiculata might in turn facilitate and maintain the formation of climax mangroves in the middle region of the Merbok river estuary.Entities:
Keywords: Merbok river estuary; Rhizophora apiculata; carbon metabolism; mangrove succession; microbial community and function
Year: 2021 PMID: 34950118 PMCID: PMC8689078 DOI: 10.3389/fmicb.2021.764974
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 5.640
FIGURE 1Location of sampling sites in Merbok river estuary, Malaysia. Sediment samples were collected from Sonneratia alba (yellow circle), Rhizophora apiculata (blue circle) and Bruguiera parviflora (green circle).
FIGURE 2Diversity and significant difference analysis of operational taxonomic units (OTUs). (A) Shannon index of OTU level. (B) ACE index of OTU level. (C) Venn diagram analysis of OTU numbers between samples. (D) Significant difference analysis of OTUs between RA and SN. (E) Significant difference analysis of OTUs between BP and SN. (F) Significant difference analysis of OTUs between RA and BP. SN, Sonneratia alba; RA, Rhizophora apiculata; BP, Bruguiera parviflora.
FIGURE 3The components of bacterial taxa at class level (A) and order level (B). (C) Significant difference analysis of dominant taxa at class level. (D) Significant difference analysis of dominant taxa at order level. SN, Sonneratia alba; RA, Rhizophora apiculata; BP, Bruguiera parviflora.
FIGURE 4(A) Principal coordinates analysis (PCoA) of bacterial community structure. (B) Canonical correlation analysis of environmental factors and bacterial community. (C) Correlation analysis of dominant bacterial taxa and environmental factors. SN, Sonneratia alba; RA, Rhizophora apiculata; BP, Bruguiera parviflora.
FIGURE 5Significant difference analysis of metabolic function based on Kyoto Encyclopedia of Genes and Genomes (KEGG) function annotation. SN, Sonneratia alba; RA, Rhizophora apiculata; BP, Bruguiera parviflora.
FIGURE 6Contribution analysis of dominant microbial taxa to the function at order level. SN, Sonneratia alba; RA, Rhizophora apiculata; BP, Bruguiera parviflora.