| Literature DB >> 34950115 |
Tamir Ofek1,2, Maya Lalzar3, Sivan Laviad-Shitrit1, Ido Izhaki1, Malka Halpern1,4.
Abstract
Intensive freshwater aquaculture in the Spring Valley, Israel, is implemented mainly in earthen fishponds and reservoirs that are stocked with a variety of edible fish species. Here we sampled six different healthy fish species from these intensive aquacultures. The fish were hybrid striped bass, European bass, red drum (all carnivores), hybrid tilapia, flathead grey mullet (both herbivores), and common carp (an omnivore). Significant differences were found among the intestinal microbiota of the six studied fish species. The microbiota composition diversity was strongly related to the trophic level of the fish, such that there was a significant difference between the carnivore and the herbivore species, while the omnivore species was not significantly different from either group. The most abundant genus in the majority of the fishes' intestinal microbiota was Cetobacterium. Furthermore, we found that beside Cetobacterium, a unique combination of taxa with relative abundance >10% characterized the intestine microbiota of each fish species: unclassified Mycoplasmataceae, Aeromonas, and Vibrio (hybrid striped bass); Turicibacter and Clostridiaceae 1 (European bass); Vibrio (red drum); ZOR0006-Firmicutes (hybrid tilapia); unclassified Mycoplasmataceae and unclassified Vibrionaceae (flathead grey mullet); and Aeromonas (common carp). We conclude that each fish species has a specific bacterial genera combination that characterizes it. Moreover, diet and the trophic level of the fish have a major influence on the gut microbiota of healthy fish that grow in intensive freshwater aquaculture.Entities:
Keywords: Cetobacterium; edible fish; intensive freshwater aquaculture; microbiota composition; trophic level
Year: 2021 PMID: 34950115 PMCID: PMC8689067 DOI: 10.3389/fmicb.2021.760266
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 5.640
ADONIS test showing that there was a significant difference between the microbiota composition of the fish and different factors.
| Factor |
|
|
|
|
| Fish species | 5 | 4.91 | 0.230 | 0.001 |
| Fish size | 1 | 2.95 | 0.027 | 0.003 |
| Fish species × fish size | 3 | 2.71 | 0.076 | 0.001 |
| Fish trophic level | 2 | 1.95 | 0.047 | 0.003 |
| Fish sampling season | 3 | 1.80 | 0.065 | 0.003 |
FIGURE 1NMDS (Bray–Curtis dissimilarity) plot for the intestinal microbiota composition (stress value <0.2, K = 3) of small (<100 g) and big (>100 g) fish from the six different species. Significant differences were found between the microbiota composition of the different fish species (Table 1 and Supplementary Table 3).
FIGURE 2α-Diversity (Simpson index) of the intestinal microbiota composition from the six different fish species (Kruskal–Wallis Chi-squared = 20.562, df = 5, p < 0.001) by seasons. Letters indicate significant differences based on Dunn test for post hoc using Benjamini–Hochberg correction for false discovery rate.
FIGURE 3Taxa mean relative abundances up to the genus (A) and at the phylum (B) levels for the intestinal microbiota in the studied fish species. Uncl., unclassified.
Highly dominant intestinal microbiota taxa, classified up to the genus level with 10% or higher relative abundance in at least one fish species.
| Taxon | Class | European bass | Hybrid striped bass | Red drum | Common carp | Hybrid tilapia | Flathead grey mullet |
|
|
| 0.0 |
| 0.0 | 2.5 | 0.0 |
|
|
|
| 8.3 |
| 1.5 |
| 0.7 | 6.6 |
|
|
| 1.8 | 0.1 | 7.9 | 0.0 | 3.2 |
|
|
|
| 3.1 |
|
| 2.5 | 0.3 | 0.8 |
|
|
|
|
|
|
|
| 4.9 |
|
|
| 0.0 | 6.7 | 0.2 | 5.2 |
| 1.1 |
|
|
|
| 0.2 | 2.2 | 0.0 | 0.3 | 0.0 |
|
|
| 6.3 | 0.0 | 0.1 | 0.7 | 0.1 |
Taxa with the abundance of more than 10% are marked in bold.
FIGURE 4Normalized abundance of six different fish species intestinal ASVs. The ASVs that were chosen (two to six ASVs for each fish species) were those with the highest LDA score by LEfSe analysis. Uncl., unclassified.