| Literature DB >> 34946922 |
Sungyang Jo1, Kye Won Park2, Yun Su Hwang1, Seung Hyun Lee1, Ho-Sung Ryu3, Sun Ju Chung1.
Abstract
Dementia is one of the most disabling nonmotor symptoms of Parkinson's disease (PD). However, the risk factors contributing to its development remain unclear. To investigate genetic variants associated with dementia in PD, we performed microarray genotyping based on a customized platform utilizing variants identified in previous genetic studies. Microarray genotyping was performed in 313 PD patients with dementia, 321 PD patients without dementia, and 635 healthy controls. The primary analysis was performed using a multiple logistic regression model adjusted for age and sex. SNCA single nucleotide polymorphism (SNP) rs11931074 was determined to be most significantly associated with PD (odds ratio = 0.66, 95% confidence interval = 0.56-0.78, p = 7.75 × 10-7). In the analysis performed for patients with PD only, MUL1 SNP rs3738128 (odds ratio = 2.52, 95% confidence interval = 1.68-3.79, p = 8.75 × 10-6) was found to be most significantly associated with dementia in PD. SNPs in ZHX2 and ERP29 were also associated with dementia in PD. This microarray genomic study identified new loci of MUL1 associated with dementia in PD, suggesting an essential role of mitochondrial dysfunction in the development of dementia in patients with PD.Entities:
Keywords: Parkinson’s disease; cognition; dementia; genome-wide association study
Mesh:
Substances:
Year: 2021 PMID: 34946922 PMCID: PMC8701809 DOI: 10.3390/genes12121975
Source DB: PubMed Journal: Genes (Basel) ISSN: 2073-4425 Impact factor: 4.141
Baseline clinical characteristics of the study subjects.
| Characteristics | PD Dementia ( | PD without Dementia ( | Controls | |
|---|---|---|---|---|
| Age at onset, years | 64.0 (57.0−68.0) | 63.0 (57.0−68.0) | - | 0.449 |
| Age at latest follow-up, years | 76.0 (72.0–81.0) | 75.0 (72.0−80.0) | 68.0 (64.0−72.0) a,b | <0.001 |
| Disease duration, years | 12.0 (9.0−17.0) | 12.0 (9.0−16.0) | - | 0.896 |
| Female, | 179 (57.2%) | 166 (51.7%) | 285 (44.9%) a | 0.001 |
| Education, years | 6.0 (2.0−12.0) | 12.0 (6.0−16.0) c | 12.0 (9.0−16.0) a | <0.001 |
| Latest MMSE | 17.0(13.0−20.0) | 27.0 (26.0−29.0) c | 28.0 (26.0−29.0) a | <0.001 |
| Age at dementia, years | 73.0 (69.0−78.0) | - | - |
PD, Parkinson’s disease; MMSE, Mini-Mental Status Examination. a Significant difference compared with PD dementia using Dunn’s post hoc test. b Significant difference compared with PD without dementia using Dunn’s post hoc test. c Significant difference compared with healthy controls using Dunn’s post hoc test.
Figure 1Manhattan plots for Parkinson’s disease (PD). The genes nearest to the top 10 significant variants are labeled. The x-axis represents the base pair position of the variants from chromosome 1 to chromosome 22. The SNCA loci showed a statistically significant association with PD after Bonferroni correction. SNCA SNP rs11931074 was most significantly associated with PD (OR = 0.66, 95% CI = 0.56–0.78, p = 7.75 × 10–7). The SPHK1 and FYN loci were also associated with PD.
Top 10 genetic variants associated with Parkinson’s disease in the order of statistical significance.
| Gene | SNP | Chr | Position | Region Relative to the Gene | Allele (Minor/Major) | Minor Allele Frequency (Case/Control) | OR (95% CI) | |
|---|---|---|---|---|---|---|---|---|
|
| rs11931074 | 4 | 89718364 | intron, downstream, upstream | G/C | 0.37/0.46 | 0.66 (0.56, 0.78) | 7.75 × 10–7 |
|
| rs12642514 | 4 | 89708246 | intron, downstream, upstream | A/C | 0.36/0.46 | 0.66 (0.58, 0.79) | 2.08 × 10–6 |
|
| rs356191 | 4 | 89766969 | Intron | A/G | 0.06/0.10 | 0.52 (0.38, 0.70) | 2.64 × 10–5 |
|
| rs80184884 | 4 | 89705068 | intron, downstream, upstream | G/A | 0.06/0.10 | 0.52 (0.38 0.71) | 4.24 × 10–5 |
|
| rs2247856 | 17 | 76385474 | missense, UTR-5, exon | A/G | 0.16/0.22 | 0.65 (0.53, 0.80) | 4.35 × 10–5 |
|
| rs6599077 | 3 | 40055127 | Intron | A/G | 0.43/0.35 | 1.42(1.20, 1.68) | 4.81 × 10–5 |
|
| rs577924 | 11 | 122264399 | Intron | C/T | 0.43/0.35 | 1.41 (1.19, 1.67) | 6.05 × 10–5 |
|
| rs75876872 | 4 | 89705795 | intron, downstream, upstream | G/A | 0.05/0.08 | 0.49 (0.35, 0.69) | 6.07 × 10–5 |
|
| rs1473702 | 20 | 11253884 | intron, downstream | C/T | 0.51/0.44 | 1.38 (1.18, 1.62) | 8.05 × 10–5 |
|
| rs7772036 | 6 | 111739596 | Intron | G/A | 0.32/0.39 | 0.72 (0.61, 0.85) | 9.74 × 10–5 |
Chr, chromosome; OR, odds ratio; CI, confidence interval.
Figure 2Manhattan plots for dementia in Parkinson’s disease (PD). The genes nearest to the top 10 significant variants are labeled. The x-axis represents the base pair position of the variants from chromosome 1 to chromosome 22. The MUL1 loci was most significantly associated with dementia in PD. MUL1 SNP rs3738128 (OR = 2.52, 95% CI = 1.68–3.79, p = 8.75 × 10–6) was most significantly associated with dementia in PD. The ZHX2 and ERP29 loci were also associated with dementia in PD.
Top 10 genetic variants associated with dementia in Parkinson’s disease in the order of statistical significance.
| Gene | SNP | Chr | Position | Region Relative to the Gene | Allele (Minor/Major) | Minor Allele Frequency (Case/Control) | OR (95% CI) | |
|---|---|---|---|---|---|---|---|---|
|
| rs3738128 | 1 | 20499992 | UTR-3 | G/C | 0.07/0.11 | 2.52 (1.68, 3.79) | 8.75 × 10–6 |
|
| rs11779459 | 8 | 122968311 | Intron | T/C | 0.34/0.29 | 0.56 (0.43, 0.74) | 3.65 × 10–5 |
|
| rs4767293 | 12 | 112025492 | downstream | A/G | 0.04/0.06 | 3.05 (1.77, 5.27) | 6.41 × 10–5 |
|
| rs7395791 | 11 | 69448148 | upstream, downstream | A/G | 0.56/0.50 | 0.61 (0.47, 0.78) | 8.44 × 10–5 |
|
| rs7553864 | 1 | 87147675 | Intron | T/C | 0.14/0.19 | 1.88 (1.37, 2.6) | 1.15 × 10–4 |
|
| rs12566937 | 1 | 20506181 | Intron | G/T | 0.13/0.17 | 1.91 (1.37, 2.67) | 1.33 × 10–4 |
|
| rs1889714 | 10 | 29099710 | upstream, downstream | A/G | 0.12/0.09 | 0.43 (0.28, 0.66) | 1.47 × 10–4 |
|
| rs12026039 | 1 | 104028469 | downstream, upstream | G/A | 0.51/0.47 | 0.61 (0.47, 0.79) | 1.74 × 10–4 |
|
| rs912062 | 9 | 841152 | upstream, downstream | C/A | 0.17/0.22 | 1.76 (1.31, 2.37) | 1.82 × 10–4 |
|
| rs11688682 | 2 | 120590036 | Upstream | C/G | 0.08/0.04 | 2.62 (1.57, 4.37) | 2.30 × 10–4 |
SNP, single-nucleotide polymorphism; Chr, chromosome; OR, odds ratio; CI, confidence interval.
Figure 3Regional association plot of the genetic variants of MUL1. MUL1 SNP rs12566937 showed moderate linkage disequilibrium with MUL1 SNP rs3738128.