| Literature DB >> 34946735 |
Poul Erik Hansen1, Mohammad Vakili2, Fadhil S Kamounah3, Jens Spanget-Larsen1.
Abstract
The vibrational NH stretching transitions in secondary amines with intramolecular NH···O hydrogen bonds were investigated by experimental and theoretical methods, considering a large number of compounds and covering a wide range of stretching wavenumbers. The assignment of the NH stretching transitions in the experimental IR spectra was, in several instances, supported by measurement of the corresponding ND wavenumbers and by correlation with the observed NH proton chemical shifts. The observed wavenumbers were correlated with theoretical wavenumbers predicted with B3LYP density functional theory, using the basis sets 6-311++G(d,p) and 6-31G(d) and considering the harmonic as well as the anharmonic VPT2 approximation. Excellent correlations were established between observed wavenumbers and calculated harmonic values. However, the correlations were non-linear, in contrast to the results of previous investigations of the corresponding OH···O systems. The anharmonic VPT2 wavenumbers were found to be linearly related to the corresponding harmonic values. The results provide correlation equations for the prediction of NH stretching bands on the basis of standard B3LYP/6-311++G(d,p) and B3LYP/6-31G(d) harmonic analyses, with standard deviations close to 38 cm-1. This is significant because the full anharmonic VPT2 analysis tends to be impractical for large molecules, requiring orders of magnitude more computing time than the harmonic analysis.Entities:
Keywords: DFT calculations; NH stretching wavenumbers; NH/ND isotopic wavenumber ratios; NMR chemical shifts; anharmonicity; secondary amines
Year: 2021 PMID: 34946735 PMCID: PMC8706864 DOI: 10.3390/molecules26247651
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
The compounds investigated in this study (for type, etc., see Scheme 1).
| No. | Type | R1 | R2 | R3 | X | Name |
|---|---|---|---|---|---|---|
|
| A | H | H | H | ( | |
|
| A | H | H | Ethyl | CH3 | ( |
|
| A | H | H | Ethyl | CF3 | ( |
|
| A | CH3 | H | CH3 | CF3 | ( |
|
| A | H | NO2 | CH3 | CH3 | ( |
|
| B | H | CH3 | Ph (phenyl) | CH3 | ( |
|
| B | H | CH3 | Ph | ( | |
|
| B | H | CH3 | CH3 | ( | |
|
| B | H | CH3 | CH3 | ( | |
|
| B | H | CH3 | CH3 | ( | |
|
| B | H | CH3 | 2,6-diCH3Ph | CH3 | ( |
|
| B | H | CH3 | CH3 | CH3 | ( |
|
| B | H | Ph | Isopropyl | CF3 | ( |
|
| B | CH3 | CH3 | CH3 | CH3 | ( |
|
| B | CH3 | CH3 | CH3 | ( | |
|
| C | H | CH3 | Ph | - | ( |
|
| C | H | CH3 | CH3 | - | ( |
|
| C | CH3 | CH3 | Ph | - | ( |
|
| C | CH3 | CH3 | CH3 | - | ( |
|
| C | CH3 | CH3 | CH2Ph | - | ( |
|
| C | H | CH3 | CH2Ph | - | ( |
|
| D | CH2CH2NH2 | - | - | - | ( |
|
| D | - | - | - | ( | |
|
| D | - | - | - | ( | |
|
| E | - | - | - | 5,5-dimethyl-3-( | |
|
| E | Ph | - | - | - | 5,5-dimethyl-3-anilino-2-nitroso-2-cyclohexen-1-one |
|
| F | CH3 | - | - | - | 5,5-dimethyl-2-(1-(methylamino)ethylidene)cyclohexane-1,3-dione |
|
| F | Iso-propyl | - | - | - | 2-(1-(isopropylamino)ethylidene)-5,5-dimethylcyclohexane-1,3-dione |
|
| F | Ph | - | - | - | 5,5-dimethyl-2-(1-(phenylamino)ethylidene)cyclohexane-1,3-dione |
|
| G | H | CH3 | - | ( | |
|
| G | CH3 | CH3 | - | ( | |
|
| G | H | Bu | - | ( | |
|
| H | CH3 | - | - | - | ( |
|
| H | Ph | - | - | - | ( |
|
| I | Et | COOEt | - | diethyl 2-(pyrrolidin-2-ylidene)malonate | |
|
| I | Et | COOEt | - | diethyl 2-(piperidin-2-ylidene)malonate | |
|
| I | Et | COOEt | - | diethyl 2-(azepan-2-ylidene)malonate | |
|
| J | CH3 | CH3 | - | - | 2,2-dimethyl-5-(1-(methylamino)ethylidene)-1,3-dioxane-4,6-dione |
|
| J | Et | CH2COOEt | - | - | ethyl 2-(1-(2,2-dimethyl-4,6-dioxo-1,3-dioxan-5-ylidene)propylamino)acetate |
|
| K | - | - | - | - | (2 |
|
| L | CH2OCOCH3 | CH2OCOCH3 | - | - | diethyl 2,6-bis(acetoxymethyl)-4-phenyl-1,4-dihydropyridine-3,5-dicarboxylate |
|
| L | CH3 | CH2OCOCH3 | - | - | diethyl 2-(acetoxymethyl)-6-methyl-4-phenyl-1,4-dihydropyridine-3,5-dicarboxylate |
|
| L | CH3 | CH3 | - | - | diethyl 2,6-dimethyl-4-phenyl-1,4-dihydropyridine-3,5-dicarboxylate |
|
| B | H | CH3 | CH3 | ( | |
|
| B | CH3 | CH3 | Ph | CH3 | ( |
Scheme 1General structures of the investigated compounds. For substituents and names, see Table 1.
NH and ND stretching wavenumbers, νNH and νND (cm−1), measured in CCl4 solution. Several νNH values are estimated on the basis of the νNH/νND ratio (footnote 2).
| Compound 1 | νNH | νND |
|---|---|---|
|
| 3031 2 | 2262 |
|
| 3058 2 | 2280 |
|
| 3063 2 | 2286 |
|
| 3047 2 | 2274 |
|
| 3058 2 | 2282 |
|
| 3041 2 | 2270 |
|
| 3254, 3185 3 | 2403 |
|
| 3295 | 2431 |
|
| 3262 | 2411 |
|
| 3259 | 2409 |
|
| 3289 | 2435 |
|
| 3047 2 | 2274 4 |
|
| 2975 2 | 2220 |
1 See Table 1. 2 Estimated from the observed νND, assuming νNH/νND = 1.34 (see Section 4). 3 Two bands are observed [7]; the larger wavenumber is used in the correlation analyses. 4 Ref. [48].
Theoretical NH stretching wavenumbers (cm−1; Harm = harmonic, Anh = VPT2 anharmonic) and NH bond lengths RNH (Å) computed with B3LYP. Observed or estimated wavenumbers νNH (cm−1) and observed NH proton chemical shifts δNH (ppm). Entries in italics indicate wavenumbers predicted by Equations (1) and (2).
| Compound 1 | 6-31G(d) | 6-311++G(d,p) | Observed | ||||||
|---|---|---|---|---|---|---|---|---|---|
| RNH | Harm | Anh |
| Harm |
| νNH | δNH | Ref. | |
|
| 1.0236 | 3410 | 3208 |
| 3424 |
| 3195 | - | [ |
|
| 1.0224 | 3404 | 3176 |
| 3400 |
| 3190 | - | [ |
|
| 1.0238 | 3411 | 3208 |
| 3422 |
| 3222 | - | [ |
|
| 1.0221 | 3432 | 3214 |
| 3441 |
| 3206 | 10.21 | [ |
|
| 1.0270 | 3341 | 3079 |
| 3362 |
| 3180 | - | [ |
|
| 1.0303 | 3274 | 2932 |
| 3244 |
| 3031 4,5 | 12.48 | [ |
|
| 1.0315 | 3209 | 2909 |
| 3242 |
| 3056 | 13.07 | [ |
|
| 1.0305 | 3266 | 2973 |
| 3253 |
| 3058 5 | 12.34 | [ |
|
| 1.0307 | 3268 | 2943 |
| 3258 |
| 3063 5 | 12.25 | [ |
|
| 1.0306 | 3276 | - |
| 3260 |
| 3047 5 | 12.42 | [ |
|
| 1.0311 | 3266 | - |
| 3274 |
| 3058 5 | 11.95 | [ |
|
| 1.0263 | 3342 | 3052 |
| 3349 |
| 3171 | 10.70 | [ |
|
| 1.0272 | 3340 | - |
| 3344 |
| 3205 | 11.11 | [ |
|
| 1.0265 | 3322 | - |
| 3311 |
| 3041 5 | 11.86 | - |
|
| 1.0322 | 3226 | - |
| 3205 |
| 3004 4 | - | [ |
|
| 1.0244 | 3382 | 3147 |
| 3388 |
| 3254 4 | 10.39 | [ |
|
| 1.0194 | 3432 | 3247 |
| 3469 |
| 3295 | 8.46 | [ |
|
| 1.0248 | 3363 | - |
| 3360 |
| - | - | - |
|
| 1.0199 | 3442 | - |
| 3439 |
| 3262 | 9.14 | - |
|
| 1.0215 | 3425 | - |
| 3422 |
| 3282 | 9.66 6 | [ |
|
| 1.0217 | 3427 | - |
| 3442 |
| 3289 7 | 8.95 | [ |
|
| 1.0377 | 3138 | 2782 |
| 3102 |
| 2870 | 14.18 | [ |
|
| 1.0422 | 3059 | 2574 |
| 3022 |
| 2610 | 15.60 | [ |
|
| 1.0440 | 3027 | 2591 |
| 2978 |
| 2602 | 15.90 | [ |
|
| 1.0424 | 3050 | 2574 |
| 3048 |
| 2560 8 | 18.41 | [ |
|
| 1.0418 | 3048 | 2584 |
| 3031 |
| 2340 8 | 18.35 | [ |
|
| 1.0330 | 3208 | 2817 |
| 3181 |
| - | 13.3 | [ |
|
| 1.0345 | 3172 | 2814 |
| 3140 |
| 2900 9 | 13.6 | [ |
|
| 1.0386 | 3124 | 2743 |
| 3077 |
| 2760 | 15.2 | [ |
|
| 1.0231 | 3420 | - |
| 3440 |
| - | 8.84 | [ |
|
| 1.0245 | 3367 | - |
| 3374 |
| - | 10.26 | [ |
|
| 1.0253 | 3381 | 3121 |
| 3390 |
| 3160 | - | [ |
|
| 1.0118 | 3599 | - |
| 3613 |
| 3302 | 6.60 | [ |
|
| 1.0216 | 3449 | - |
| 3466 |
| 3314 | 9.05 | [ |
|
| 1.0194 | 3481 | - |
| 3488 |
| 3317 | 9.52 | [ |
|
| 1.0236 | 3385 | - |
| 3372 |
| 3242 | 10.08 | [ |
|
| 1.0222 | 3405 | - |
| 3411 |
| 3280 | 8.83 | [ |
|
| 1.0262 | 3341 | - |
| 3331 |
| 3224 | 11.32 | [ |
|
| 1.0292 | 3318 | - |
| 3304 |
| 3172 | 11.60 | [ |
|
| 1.0217 | 3415 | - |
| 3414 |
| 3270 | - | [ |
|
| 1.0148 | 3558 | - |
| 3559 |
| 3403 | 7.7 | [ |
|
| 1.0153 | 3541 | - |
| 3551 |
| 3347 | 6.6 | [ |
|
| 1.0092 | 3631 | - |
| 3636 |
| 3336 | 5.6 | [ |
|
| 1.0308 | 3266 | - |
| 3237 |
| 3047 5 | 12.64 | [ |
|
| 1.0322 | 3226 | - |
| 3205 |
| 2975 5 | 13.46 | [ |
1 See Table 1. 2 Wavenumbers predicted by Equation (2). 3 Wavenumbers predicted by Equation (1). 4 Not assigned as NH stretching in the referenced paper. 5 Estimated values (Table 3), not included in the correlation analyses. 6 NMR data from Ref. [36]. 7 Value varies slightly with solvent. 8 Not included in the correlation analyses, see Section 3.1. 9 Approximate.
Figure 1IR spectra of (Z)-ethyl 3-(methylamino)but-2-enoate (17) measured in CCl4 solution; 17-H and 17-D indicate the normal and the deuterated compound, respectively. Contributions of 17-H to the 17-D spectrum due to incomplete deuteration are removed by subtraction (Figure S15).
Figure 2Correlation of observed NH stretching wavenumbers and observed NH chemical shifts. The points for the nitroso compounds 25 and 26 are not included in the correlation analysis.
Figure 3Scaling correlation of observed vibrational wavenumbers for (Z)-ethyl 3-(methylamino)but-2-enoate (17) and harmonic wavenumbers calculated with B3LYP/6-311++G(d,p) (see Figures S19 and S20 for details).
Figure 4Correlation of observed NH stretching wavenumbers and harmonic wavenumbers calculated with B3LYP/6-311++G(d,p).
Figure 5Observed isotope ratios νNH/νND against observed ND stretching wavenumbers νND (cm−1) for the esters 16, 17, 19, 20, and 21 (see Table 3). The data point (2375, 1.356) is from Ref. [55].