| Literature DB >> 34938784 |
Xiaobing Liang1, Wanbing He2, Hua Zhang1, Dongling Luo1, Zhengzhipeng Zhang1, Aiting Liu1, Jinkai Wang3, Hui Huang1,2.
Abstract
Background: Vascular calcification (VC) is an important predictor of prognosis in atherosclerosis, the phenotypic transformation of vascular smooth muscle cells (VSMCs) is thought to be a process of VC. However, the implications and potential mechanisms for VSMCs phenotypic transition remain unknown.Entities:
Keywords: MMP9; atherosclerosis; inflammation; phenotypic modulation; single cell sequencing; vascular calcification; vascular smooth muscle cells
Year: 2021 PMID: 34938784 PMCID: PMC8685327 DOI: 10.3389/fcvm.2021.766613
Source DB: PubMed Journal: Front Cardiovasc Med ISSN: 2297-055X
Figure 1Twenty clusters identified based on single-cell RNA-Seq data reveal multiple cell subpopulations in calcified plaques. (A) The number of genes detected correlates significantly with the depth of sequencing. (B) PCA showing separation of cells in calcified plaques. (C) Differential genes in the first 4 PCs. (D) PCA identifies 20 PCs. (E) Differential analysis identifying the top 10 marker genes for each cell cluster is shown in the heat map. From yellow to purple indicates gene expression levels from high to low.
Figure 2Cellular annotation of subpopulations of calcified core cells, grouped and shown in varying proportions. (A) The tSNE algorithm was applied to downscale the 20 PCs and divide the cells into 20 cell clusters. (B) Identification of markers for different cell clusters. (C) Different cell clusters have different proportions in AC and PA respectively. (D) Proportions of each of the 20 cell clusters in AC and PA respectively. (E) Variation in the proportion of the 20 cell clusters in AC and PA, with closer to 50% representing less variation.
Figure 3Enrichment analysis of cluster7, protein interactions, upstream transcription factors (A) KEGG enrichment analysis of cluster 7. (B) Biological process enrichment analysis of cluster 7. (C) Enrichment analysis of cellular component of cluster 7. (D) Enrichment analysis of molecular function of cluster 7. (E) Protein interaction network of cluster 7 differential genes. (F) Statistics of cluster 7 protein-interaction pairs. (G) Specific expression of cluster 7 genes. (H) Upstream transcription factor relationship map of cluster 7 differential genes.
Figure 4Comparison of gene expression in VSMCs before knockdown of RELA and after knockdown. (A–D) Expression of RELA, MMP9, BMP2 and LGALS3 in control and TNFα-added groups after knockdown vs. before knockdown, respectively. **P < 0.01, ***P < 0.001.
Association between serum MMP9 level and the clinicopathological characteristics.
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| ≤60 | 579 | 242.98 ± 5.65 | 0.54 |
| >60 | 420 | 248.58 ±7.38 | |
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| Female | 570 | 255.07 ± 6.32 | 0.035 |
| Male | 429 | 232.40 ± 6.25 | |
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| No | 591 | 240.87 ± 5.65 | 0.238 |
| Yes | 408 | 251.80 ± 7.40 | |
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| <25 | 282 | 232.29 ± 8.20 | 0.024 |
| ≥25 | 716 | 250.02 ± 5.37 | |
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| 0 | 554 | 236.46 ± 5.59 | 0.031 |
| >0 | 445 | 256.37 ± 7.33 | |
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| ≤10 | 901 | 236.68 ± 4.48 | <0.0001 |
| >10 | 97 | 322.40 ±18.60 | |
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| <0.97 | 72 | 280.47 ± 20.57 | 0.086 |
| ≥0.97 | 927 | 242.6 ± 4.58 | |
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| <1,223 | 499 | 214.31 ± 4.99 | <0.0001 |
| ≥1,223 | 500 | 276.3 ± 7.25 | |
Figure 5Differences in serum MMP9 levels and clinical physiopathological characteristics. (A) MMP9 levels in BMI ≥25 vs. BMI <25. (B) MMP9 levels in Agatston calcium score = 0 vs. Agatston calcium score > 0. (C) MMP9 levels in CRP ≤ 10 vs. CRP >10. (D) MMP9 levels in TNF-R1 <1,223 vs. TNF-R1 ≥1,223. *P < 0.05, ****P < 0.0001.
Subgroup analysis of the association between MMP9 level and CAC progression.
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| ≤ 64 (69.6) | 1.002 | 1.000–1.003 | 0.008 |
| >64 (30.4) | 1.001 | 1.000–1.003 | 0.02 |
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| Female (57.1) | 1.002 | 1.001–1.003 | <0.0001 |
| Male (42.9) | 1 | 0.999–1.002 | 0.569 |
| ≤25 (28.2) | 1.001 | 1.000–1.003 | 0.031 |
| >25 (71.8) | 1.001 | 1.000–1.002 | 0.043 |
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| No (59.2) | 1.001 | 1.000–1.003 | 0.042 |
| Yes (40.8) | 1.001 | 1.000–1.002 | 0.063 |