Literature DB >> 34937370

On-the-fly adiabatically switched semiclassical initial value representation molecular dynamics for vibrational spectroscopy of biomolecules.

Giacomo Botti1, Michele Ceotto1, Riccardo Conte1.   

Abstract

Semiclassical (SC) vibrational spectroscopy is a technique capable of reproducing quantum effects (such as zero-point energies, quantum resonances, and anharmonic overtones) from classical dynamics runs even in the case of very large dimensional systems. In a previous study [Conte et al. J. Chem. Phys. 151, 214107 (2019)], a preliminary sampling based on adiabatic switching has been shown to be able to improve the precision and accuracy of semiclassical results for challenging model potentials and small molecular systems. In this paper, we investigate the possibility to extend the technique to larger (bio)molecular systems whose dynamics must be integrated by means of ab initio "on-the-fly" calculations. After some preliminary tests on small molecules, we obtain the vibrational frequencies of glycine improving on pre-existing SC calculations. Finally, the new approach is applied to 17-atom proline, an amino acid characterized by a strong intramolecular hydrogen bond.

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Year:  2021        PMID: 34937370     DOI: 10.1063/5.0075220

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  2 in total

1.  Quantum Anharmonic Calculations of Vibrational Spectra for Water Adsorbed on Titania Anatase(101) Surface: Dissociative versus Molecular Adsorption.

Authors:  Marco Cazzaniga; Marco Micciarelli; Fabio Gabas; Fabio Finocchi; Michele Ceotto
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2022-07-19       Impact factor: 4.177

2.  Quantum Calculations on a New CCSD(T) Machine-Learned Potential Energy Surface Reveal the Leaky Nature of Gas-Phase Trans and Gauche Ethanol Conformers.

Authors:  Apurba Nandi; Riccardo Conte; Chen Qu; Paul L Houston; Qi Yu; Joel M Bowman
Journal:  J Chem Theory Comput       Date:  2022-08-11       Impact factor: 6.578

  2 in total

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