| Literature DB >> 34933178 |
Salvatore Gitto1, Renato Cuocolo2, Kirsten van Langevelde3, Michiel A J van de Sande4, Antonina Parafioriti5, Alessandro Luzzati6, Massimo Imbriaco7, Luca Maria Sconfienza8, Johan L Bloem3.
Abstract
BACKGROUND: Atypical cartilaginous tumour (ACT) and grade II chondrosarcoma (CS2) of long bones are respectively managed with watchful waiting or curettage and wide resection. Preoperatively, imaging diagnosis can be challenging due to interobserver variability and biopsy suffers from sample errors. The aim of this study is to determine diagnostic performance of MRI radiomics-based machine learning in differentiating ACT from CS2 of long bones.Entities:
Keywords: Artificial intelligence; bone neoplasms; chondrosarcoma; machine learning; magnetic resonance imaging
Mesh:
Year: 2021 PMID: 34933178 PMCID: PMC8688587 DOI: 10.1016/j.ebiom.2021.103757
Source DB: PubMed Journal: EBioMedicine ISSN: 2352-3964 Impact factor: 8.143
Figure 1Flowchart of patient selection.
Demographics and clinical data. Age is presented as median and interquartile (1st-3rd) range.
| Center 1 | Center 2 | |
|---|---|---|
| 53 (45-62) years | 62 (49-72) years | |
| Men: n=29 | Men: n=31 | |
| Femur: n=41 | Femur: n=46 |
Figure 2Radiomics-based machine learning workflow pipeline. This workflow is similar to one recent study from our group , with differences mainly related to feature selection process and machine learning classification.
List of selected features by feature class and source image, including original, Laplacian of Gaussian-filtered (LoG) and wavelet-transformed images.
| Feature name | Feature class | Source image |
|---|---|---|
| 10th percentile | First Order | Original |
| Minor Axis Length | 2D shape | Original |
| Informational Measure of Correlation 2 | GLCM | LoG (sigma = 1) |
| Inverse Difference Normalized | GLCM | LoG (sigma = 1) |
| Run Entropy | GLRLM | LoG (sigma = 1) |
| Informational Measure of Correlation 1 | GLCM | LoG (sigma = 2) |
| Dependence Variance | GLDM | LoG (sigma = 2) |
| Small Area Emphasis | GLSZM | LoG (sigma = 3) |
| Dependence Variance | GLDM | LoG (sigma = 3) |
| Informational Measure of Correlation 1 | GLCM | LoG (sigma = 4) |
| Informational Measure of Correlation 1 | GLCM | LoG (sigma = 5) |
| Small Area Emphasis | GLSZM | LoG (sigma = 5) |
| Gray Level Non-Uniformity | GLDM | Wavelet (low-high pass filter) |
| Informational Measure of Correlation 1 | GLCM | Wavelet (high-high pass filter) |
| Size-Zone Non-Uniformity Normalized | GLSZM | Wavelet (high-high pass filter) |
| Short Run Low Gray Level Emphasis | GLRLM | Wavelet (low-low pass filter) |
| Large Area Emphasis | GLSZM | Wavelet (low-low pass filter) |
Abbreviations. GLCM, Gray Level Co-occurrence Matrix; GLDM, Gray Level Dependence Matrix; GLRLM, Gray Level Run Length Matrix; GLSZM, Gray Level Size Zone Matrix.
Figure 3ROC curve showing the classifier performance in the external test cohort.
Figure 4Precision-recall curve illustrating the classifier performance in the external test cohort.
Confusion matrix for the external test cohort.
| Predicted class | |||
|---|---|---|---|
| ACT | CS2 | ||
| 44 | 1 | ||
| 4 | 16 | ||
Classifier accuracy metrics weighted average and by class in the external test cohort.
| Class | Precision | Recall | F-score |
|---|---|---|---|
| 0.92 | 0.98 | 0.95 | |
| 0.94 | 0.80 | 0.86 | |
| 0.92 | 0.92 | 0.92 |
Figure 5Calibration curve in the external test cohort.
Figure 6Beeswarm plot of feature Shapley values in the final model.