Literature DB >> 34931802

TALE.Sense: A Versatile DNA Sensor Platform for Live Mammalian Cells.

Aziz Taghbalout1, Nathaniel Jillette1, Albert W Cheng1,2,3,4.   

Abstract

Here we describe TALE.Sense, a versatile platform for sensing DNA sequences in live mammalian cells enabling programmable generation of a customable response that discerns cells containing specified sequence targets. The platform is based on the programmable DNA binding of transcription activator-like effector (TALE) coupled to conditional intein-reconstitution producing a trans-spliced ON-switch for a response circuit. TALE.Sense shows higher efficiency and dynamic range when compared to the reported zinc-finger based DNA-sensor in detecting same DNA sequences. Swapping transcriptional activation modules and introducing SunTag-based amplification loops to TALE.Sense circuits augment detection efficiency of the DNA sensor. The TALE.Sense platform shows versatility when applied to a range of target sites, indicating its suitability for applications to identify live cell variants with anticipated DNA sequences. TALE.Sense could be integrated with other cellular or synthetic circuits by using specified DNA sequences as control-switches, thus expanding the scope in connecting inducible modules for synthetic biology.

Entities:  

Keywords:  DNA sensor; DNA sequence-targeting; TALE; biosensor; intein; trans-splicing; transcription activator-like effector

Mesh:

Substances:

Year:  2021        PMID: 34931802      PMCID: PMC9202581          DOI: 10.1021/acssynbio.1c00212

Source DB:  PubMed          Journal:  ACS Synth Biol        ISSN: 2161-5063            Impact factor:   5.249


  22 in total

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Authors:  Shimyn Slomovic; James J Collins
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Authors:  Steffen Brenzel; Thomas Kurpiers; Henning D Mootz
Journal:  Biochemistry       Date:  2006-02-14       Impact factor: 3.162

3.  Highly efficient protein trans-splicing by a naturally split DnaE intein from Nostoc punctiforme.

Authors:  Hideo Iwai; Sara Züger; Jennifer Jin; Pui-Hang Tam
Journal:  FEBS Lett       Date:  2006-02-24       Impact factor: 4.124

Review 4.  Gene-directed enzyme prodrug therapy.

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Journal:  AAPS J       Date:  2014-10-23       Impact factor: 4.009

Review 5.  TAL effectors: customizable proteins for DNA targeting.

Authors:  Adam J Bogdanove; Daniel F Voytas
Journal:  Science       Date:  2011-09-30       Impact factor: 47.728

6.  A TALEN genome-editing system for generating human stem cell-based disease models.

Authors:  Qiurong Ding; Youn-Kyoung Lee; Esperance A K Schaefer; Derek T Peters; Adrian Veres; Kevin Kim; Nicolas Kuperwasser; Daniel L Motola; Torsten B Meissner; William T Hendriks; Marta Trevisan; Rajat M Gupta; Annie Moisan; Eric Banks; Max Friesen; Robert T Schinzel; Fang Xia; Alexander Tang; Yulei Xia; Emmanuel Figueroa; Amy Wann; Tim Ahfeldt; Laurence Daheron; Feng Zhang; Lee L Rubin; Lee F Peng; Raymond T Chung; Kiran Musunuru; Chad A Cowan
Journal:  Cell Stem Cell       Date:  2012-12-13       Impact factor: 24.633

Review 7.  The bioactivation of CB 1954 and its use as a prodrug in antibody-directed enzyme prodrug therapy (ADEPT).

Authors:  R J Knox; F Friedlos; M P Boland
Journal:  Cancer Metastasis Rev       Date:  1993-06       Impact factor: 9.264

8.  Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting.

Authors:  Tomas Cermak; Erin L Doyle; Michelle Christian; Li Wang; Yong Zhang; Clarice Schmidt; Joshua A Baller; Nikunj V Somia; Adam J Bogdanove; Daniel F Voytas
Journal:  Nucleic Acids Res       Date:  2011-04-14       Impact factor: 16.971

9.  Highly efficient Cas9-mediated transcriptional programming.

Authors:  Alejandro Chavez; Jonathan Scheiman; Suhani Vora; Benjamin W Pruitt; Marcelle Tuttle; Eswar P R Iyer; Shuailiang Lin; Samira Kiani; Christopher D Guzman; Daniel J Wiegand; Dmitry Ter-Ovanesyan; Jonathan L Braff; Noah Davidsohn; Benjamin E Housden; Norbert Perrimon; Ron Weiss; John Aach; James J Collins; George M Church
Journal:  Nat Methods       Date:  2015-03-02       Impact factor: 28.547

10.  Comparison of Cas9 activators in multiple species.

Authors:  Alejandro Chavez; Marcelle Tuttle; Benjamin W Pruitt; Ben Ewen-Campen; Raj Chari; Dmitry Ter-Ovanesyan; Sabina J Haque; Ryan J Cecchi; Emma J K Kowal; Joanna Buchthal; Benjamin E Housden; Norbert Perrimon; James J Collins; George Church
Journal:  Nat Methods       Date:  2016-05-23       Impact factor: 28.547

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