| Literature DB >> 34931260 |
Chen Lin1, Zhisen Shen2, Yanguo Li3, Shanshan Gu1, Yaqin Lu1, Hongxia Deng1, Dong Ye1, Qi Ding4.
Abstract
PROPOSE: Laryngeal chondrosarcoma is a rare non-epithelial malignant tumor. At present, the cell type composition and molecular mechanism of laryngeal chondrosarcoma have not been systematically studied.Entities:
Keywords: Immunohistochemistry; Laryngeal chondrosarcoma; SLAMF9 gene; Single-cell sequencing and analysis; Tumor microenvironment
Mesh:
Substances:
Year: 2021 PMID: 34931260 PMCID: PMC8688141 DOI: 10.1007/s00432-021-03883-1
Source DB: PubMed Journal: J Cancer Res Clin Oncol ISSN: 0171-5216 Impact factor: 4.553
Fig. 1Single-cell RNA-Seq reveals the constituent cell types in laryngeal chondrosarcoma. A Histological and imaging features of human laryngeal chondrosarcoma. a The laryngoscope showed a mass protruding to the laryngeal cavity under the glottis; b the CT reconstruction pattern showed a soft tissue mass in the right subglottic wall, and the boundary was not clear; c Hematoxylin–eosin staining of the surgical specimens on the left revealed the cartilage tissue of the tumor, while the right side was the uninvolved adjacent normal cartilage tissue; B a A total of 17 cell clusters were identified; b t-SNE maps showed laryngeal chondrosarcoma tumor and paracancerous sample; CC chondrosarcoma, LO laryngeal chondrosarcoma; C The number of each cluster and 5 cell types in tumor and paracancerous samples; D The violin graph showing the expression of representative markers in each cell types. X-axis represents different cell types; Y-axis represents gene expression level; E a t-SNE diagram shows the main cell types in laryngeal chondrosarcoma; b Gene expression activity distribution map of the identified cells
Known markers for cell population identification
| Cell Type | Clusters | Marker Genes | References |
|---|---|---|---|
| Chondrocytes | 1–8,11,13,15 | COMP, P3H2, BHLHE41, CRLF1 | Posey et al. ( |
| Fibroblasts | 16 | ACTA2, CNN1, MYH11 | Korosec et al. ( |
| Endothelial cells | 9 | FLT1, PLVAP, VWF | Kivela et al. ( |
| Myeloid cells | 10,14 | CD14, CD163, ITGAX | Nielsen et al. ( |
| Lymphocytes | 12 | CD3D, CD79A, CD69 | da Silva et al. ( |
Cell clusters distribution in laryngeal chondrosarcoma and normal tissue
| Cell type | Adjacent | Adjacent ratio (%) | Tumor | Tumor ratio (%) | |
|---|---|---|---|---|---|
| Chondrocytes | 1673 | 30.67 | 2981 | 54.65 | |
| Endothelials | 163 | 2.99 | 29 | 0.53 | |
| Fibroblasts | 70 | 1.28 | 15 | 0.27 | |
| Myeloid cells | 135 | 2.47 | 215 | 3.94 | |
| Lymphocytes | 81 | 1.48 | 93 | 1.70 | |
Fig. 2Chondrocyte clustering and status in laryngeal chondrosarcoma. A t-SNE diagram showing the clusters and main subgroups of chondrocytes in laryngeal chondrosarcoma and their corresponding tissue sites; B UMAP showing the expression of representative markers in the cell subtypes of chondrocytes identified by laryngeal chondrosarcoma; C Histogram showing the main subsets of chondrocytes in laryngeal chondrosarcoma and the content of each subgroup in chondrosarcoma tissue and adjacent tissue; D KEGG pathway analysis of RegCs and Chondrocytes_SLAMF9 in laryngeal chondrosarcoma; E Immunohistochemical staining of SLAMF9 in chondrosarcoma and adjacent tissues
Fig. 3Functional analysis and clinical significance in chondrocytes and cancer cells. A a UMAP cluster diagram of subsets of myeloid cells; b. Proportion of myeloid cells subsets in tumor and paracancerous tissue; B pseudotime analysis trajectory map showing the differentiation status of myeloid cells; C a overview of cell communication; b Top ligand-receptor interactions in tumor and paracancerous areas; c. Top ligand-receptor interactions in laryngeal chondrosarcoma; d top ligand-receptor interactions in paracancerous tissue; D a Predictive heatmap of ligand-receptor pairs among myeloid cells and chondrocyte subsets; b Prediction heatmap of target genes targeting chondrocytes with myeloid cell ligands