| Literature DB >> 34922599 |
Darine Slama1, Rihab Baraket2, Latifa Remadi2, Emna Chaker2, Hamouda Babba2.
Abstract
BACKGROUND: Culicoides kingi and Culicoides oxystoma belong to the Schultzei group of biting midges. These two species are vectors of disease in livestock of economic importance. As described in the literature, morphological identification for discrimination between them is still unclear. However, species-specific identification is necessary to solve taxonomic challenges between species and to understand their roles in disease transmission and epidemiology. This study aims to develop accurate tools to discriminate C. oxystoma from C. kingi using traditional morphometry and polymerase chain reaction-restriction fragment length polymorphism (PCR RFLP) assays for use in developing countries.Entities:
Keywords: Culicoides kingi; Culicoides oxystoma; Molecular identification; Morphological; Morphometric; PCR–RFLP; Tunisia
Mesh:
Substances:
Year: 2021 PMID: 34922599 PMCID: PMC8684274 DOI: 10.1186/s13071-021-05084-8
Source DB: PubMed Journal: Parasit Vectors ISSN: 1756-3305 Impact factor: 3.876
Fig. 1Location of study sites in Kairouan (modified according to [27]). N north, E eastern
In silico analysis showing the size of the mitochondrial COI region from five Culicoides species and 10 NCBI accessions, and their restriction pattern after digestion with SspI
| NCBI GenBank accession no. | PCR product (bp) | Restriction pattern (bp) | Geographical origin | |
|---|---|---|---|---|
| MH135787 | 707 | 385, 233, 89 | China | |
| MF399786 | 683 | 385, 207, 91 | Lebanon | |
| MF399784 | 660 | 385, 182, 93 | Lebanon | |
| KJ729983 | 690 | 615, 75 | Tunisia | |
| KF682495 | 472 | 371, 101 | Senegal | |
| MF399776 | 681 | 490, 161 | Benin | |
| KJ833714 | 472 | 385, 81, 6 | Senegal | |
| MF399696 | 687 | 385, 191, 111 | Madagascar | |
| KF682525 | 802 | 701, 101 | South Africa | |
| MH340014 | 564 | 385, 161, 18 | Namibia |
bp: base pairs
Fig. 2Culicoides species collected in the district of Kairouan according to sex
The eigenvalues, percent variance, and cumulative variance of the axes from PCA of 13 morphometric measurements of C. kingi and C. oxystoma
| Axis (principal component) | Initial eigenvalues | ||
|---|---|---|---|
| Total | % of variance | Cumulative % | |
| 1 | 4.624 | 35.566 | 35.566 |
| 2 | 1.447 | 11.130 | 46.696 |
| 3 | 1.267 | 9.744 | 56.440 |
| 4 | 1.037 | 7.976 | 64.416 |
| 5 | 1.018 | 7.830 | 72.246 |
| 6 | 0.779 | 5.995 | 78.241 |
| 7 | 0.730 | 5.616 | 83.857 |
| 8 | 0.570 | 4.388 | 88.246 |
| 9 | 0.515 | 3.962 | 92.207 |
| 10 | 0.346 | 2.658 | 94.865 |
| 11 | 0.319 | 2.453 | 97.318 |
| 12 | 0.199 | 1.529 | 98.847 |
| 13 | 0.150 | 1.153 | 100.000 |
Fig. 3a A scree plot highlighting the relationship between the eigenvalues and the number of axes in PCA of 13 morphometric measurements of C. kingi and C. oxystoma; b six ratios derived from morphometric measurements of those individuals
Characterization of C. kingi and C. oxystoma using the loadings of PCA on 13 morphometric parameters
| Parameter | Principal component | ||||
|---|---|---|---|---|---|
| PC1 | PC2 | PC3 | PC4 | PC5 | |
| Length of the 8 basal segments | 0.904 | 0.085 | 0.003 | 0.144 | 0.067 |
| Wing length | 0.720 | 0.356 | 0.297 | 0.012 | 0.368 |
| Wing width | 0.653 | 0.385 | 0.409 | 0.063 | 0.244 |
| Length of flagellomere 11 | 0.613 | 0.372 | 0.314 | −0.101 | 0.023 |
| Width of the third palpus | 0.540 | 0.418 | 0.093 | 0.366 | 0.107 |
| Spermatheca 1 length | 0.045 | 0.814 | 0.061 | −0.158 | 0.205 |
| Length of the flagellar segment | 0.240 | 0.718 | 0.211 | 0.047 | −0.040 |
| Length of flagellomere 10 | 0.267 | 0.512 | −0.107 | 0.362 | 0.311 |
| Spermatheca 2 width | 0.107 | 0.001 | 0.885 | −0.016 | 0.183 |
| Spermatheca 2 length | 0.259 | 0.439 | 0.633 | 0.176 | −0.183 |
| Length third palpus | 0.101 | −0.044 | 0.001 | −0.842 | 0.097 |
| Length of the space of the 2 sensilla up the eye | −0.035 | −0.314 | 0.306 | 0.534 | 0.360 |
| Spermatheca 1 width | 0.101 | 0.161 | 0.084 | −0.010 | 0.872 |
Rotation method: varimax with Kaiser normalization
Characterization of C. kingi and C. oxystoma using the loadings of PCA on six ratios derived from morphometric parameters
| Principal component | |||
|---|---|---|---|
| Parameter | PC1 | PC2 | PC3 |
| Palpal ratio | 0.898 | −0.130 | 0.010 |
| Flagella ratio | 0.828 | 0.316 | 0.098 |
| Antenna segment ratio | 0.065 | −0.827 | 0.076 |
| Spermatheca 2 ratio | 0.204 | 0.783 | 0.189 |
| Wing ratio | −0.053 | −0.127 | 0.829 |
| Spermatheca 1 ratio | 0.154 | 0.240 | 0.680 |
The eigenvalues, percent variance, and cumulative variance of the axes from PCA of six ratios derived from morphometric measurements of C. kingi and C. oxystoma
| Axis (principal component) | Initial eigenvalues | ||
|---|---|---|---|
| Total | % of variance | Cumulative % | |
| 1 | 1.917 | 31.947 | 31.947 |
| 2 | 1.229 | 20.480 | 52.427 |
| 3 | 1.107 | 18.448 | 70.875 |
| 4 | 0.789 | 13.156 | 84.031 |
| 5 | 0.590 | 9.829 | 93.860 |
| 6 | 0.368 | 6.140 | 100.000 |
Fig. 4Maximum likelihood tree based on COI nucleotide sequences obtained in this study. The tree show phylogenetic analyses of three individual midges morphologically identified as C. oxystoma together with the most closely related published sequences and their GenBank accession numbers. Bootstrap values are shown on the branches