Literature DB >> 34921772

Making the cut with protease engineering.

Rebekah P Dyer1, Gregory A Weiss2.   

Abstract

Proteases cut with enviable precision and regulate diverse molecular events in biology. Such qualities drive a seemingly inexhaustible appetite for proteases with new activities and capabilities. Comprising 25% of the total industrial enzyme market, proteases appear in consumer goods, such as detergents, textile processing, and numerous foods; additionally, proteases include 25 US Food and Drug Administration-approved medicines and various research tools. Recent advances in protease engineering strategies address target specificity, catalytic efficiency, and stability. This guide to protease engineering surveys best practices and emerging strategies. We further highlight gaps and flexibilities inherent to each system that suggest opportunities for new technology development along with engineered proteases to solve challenges in proteomics, protein sequencing, and synthetic gene circuits.
Copyright © 2021 The Authors. Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  enzyme engineering; gene circuits; protease; protein engineering; synthetic biology

Mesh:

Substances:

Year:  2021        PMID: 34921772      PMCID: PMC9127713          DOI: 10.1016/j.chembiol.2021.12.001

Source DB:  PubMed          Journal:  Cell Chem Biol        ISSN: 2451-9448            Impact factor:   9.039


  87 in total

1.  Programmable protein circuits in living cells.

Authors:  Xiaojing J Gao; Lucy S Chong; Matthew S Kim; Michael B Elowitz
Journal:  Science       Date:  2018-09-21       Impact factor: 47.728

2.  Enzyme hyperactivation system based on a complementary charged pair of polyelectrolytes and substrates.

Authors:  Takaaki Kurinomaru; Shunsuke Tomita; Yoshihisa Hagihara; Kentaro Shiraki
Journal:  Langmuir       Date:  2014-03-26       Impact factor: 3.882

Review 3.  Emerging technologies for protease engineering: New tools to clear out disease.

Authors:  Jennifer L Guerrero; Patrick S Daugherty; Michelle A O'Malley
Journal:  Biotechnol Bioeng       Date:  2016-08-17       Impact factor: 4.530

4.  Six alternative proteases for mass spectrometry-based proteomics beyond trypsin.

Authors:  Piero Giansanti; Liana Tsiatsiani; Teck Yew Low; Albert J R Heck
Journal:  Nat Protoc       Date:  2016-04-28       Impact factor: 13.491

5.  Improvement in organic solvent resistance and activity of metalloprotease by directed evolution.

Authors:  Fucheng Zhu; Bingfang He; Fangli Gu; Hui Deng; Chunwu Chen; Weiyun Wang; Naifu Chen
Journal:  J Biotechnol       Date:  2019-12-21       Impact factor: 3.307

6.  Phage-assisted evolution of botulinum neurotoxin proteases with reprogrammed specificity.

Authors:  Travis R Blum; Hao Liu; Michael S Packer; Xiaozhe Xiong; Pyung-Gang Lee; Sicai Zhang; Michelle Richter; George Minasov; Karla J F Satchell; Min Dong; David R Liu
Journal:  Science       Date:  2021-02-19       Impact factor: 47.728

7.  Directed evolution converts subtilisin E into a functional equivalent of thermitase.

Authors:  H Zhao; F H Arnold
Journal:  Protein Eng       Date:  1999-01

8.  Engineering of TEV protease variants by yeast ER sequestration screening (YESS) of combinatorial libraries.

Authors:  Li Yi; Mark C Gebhard; Qing Li; Joseph M Taft; George Georgiou; Brent L Iverson
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-15       Impact factor: 11.205

9.  The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database.

Authors:  Neil D Rawlings; Alan J Barrett; Paul D Thomas; Xiaosong Huang; Alex Bateman; Robert D Finn
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

10.  Computational design of an α-gliadin peptidase.

Authors:  Sydney R Gordon; Elizabeth J Stanley; Sarah Wolf; Angus Toland; Sean J Wu; Daniel Hadidi; Jeremy H Mills; David Baker; Ingrid Swanson Pultz; Justin B Siegel
Journal:  J Am Chem Soc       Date:  2012-12-05       Impact factor: 15.419

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  1 in total

Review 1.  Proteome expansion in the Potyviridae evolutionary radiation.

Authors:  Fabio Pasin; José-Antonio Daròs; Ioannis E Tzanetakis
Journal:  FEMS Microbiol Rev       Date:  2022-07-01       Impact factor: 15.177

  1 in total

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