Literature DB >> 34913041

Discovery of Novel Proteomic Biomarkers for the Prediction of Kidney Recovery from Dialysis-Dependent AKI Patients.

Jaclyn R Daniels1, Jennie Z Ma2,3, Zhijun Cao1, Richard D Beger1, Jinchun Sun1, Laura Schnackenberg1, Lisa Pence1, Devasmita Choudhury3,4, Paul M Palevsky5,6, Didier Portilla3, Li-Rong Yu1.   

Abstract

BACKGROUND: AKI requiring dialysis (AKI-D) is associated with prolonged hospitalization, mortality, and progressive CKD among survivors. Previous studies have examined only select urine or serum biomarkers for predicting kidney recovery from AKI.
METHODS: Serum samples collected on day 8 of randomized RRT from 72 patients enrolled in the Veteran's Affairs/National Institutes of Health Acute Renal Failure Trial Network study were analyzed by the SOMAscan proteomic platform to profile 1305 proteins in each sample. Of these patients, 38 recovered kidney function and dialysis was discontinued, whereas another 34 patients remained on dialysis by day 28.
RESULTS: Differential serum levels of 119 proteins, with 53 higher and 66 lower, were detected in samples from patients who discontinued dialysis, compared with patients who remained on dialysis by day 28. Patients were classified into tertiles on the basis of SOMAscan protein measurements for the 25 proteins most differentially expressed. The association of serum levels of each protein with kidney recovery was further evaluated using logistic regression analysis. Higher serum levels of CXCL11, CXCL2/CXCL3, CD86, Wnt-7a, BTK, c-Myc, TIMP-3, CCL5, ghrelin, PDGF-C, survivin, CA2, IL-9, EGF, and neuregulin-1, and lower levels of soluble CXCL16, IL1RL1, stanniocalcin-1, IL-6, and FGF23 when classified in tertiles were significantly associated with better kidney recovery. This significant association persisted for each of these proteins after adjusting for potential confounding risk factors including age, sex, cardiovascular SOFA score, congestive heart failure, diabetes, modality of intensive dialysis treatment, cause of AKI, baseline serum creatinine, day 8 urine volume, and estimated 60-day mortality risk.
CONCLUSIONS: These results suggest concerted changes between survival-related proteins and immune-regulatory chemokines in regulating angiogenesis, endothelial and epithelial remodeling, and kidney cell regeneration, illustrating potential mechanisms of kidney recovery. Thus, this study identifies potential novel predictive biomarkers of kidney recovery in patients with AKI-D.

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Year:  2021        PMID: 34913041      PMCID: PMC8670726          DOI: 10.34067/kid.0002642021

Source DB:  PubMed          Journal:  Kidney360        ISSN: 2641-7650


  49 in total

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Authors:  Ryo Takeda; Hiroaki Nishimatsu; Etsu Suzuki; Hiroshi Satonaka; Daisuke Nagata; Shigeyoshi Oba; Masataka Sata; Masao Takahashi; Yuji Yamamoto; Yasuo Terauchi; Takashi Kadowaki; Kenji Kangawa; Tadaichi Kitamura; Ryozo Nagai; Yasunobu Hirata
Journal:  J Am Soc Nephrol       Date:  2005-11-23       Impact factor: 10.121

2.  Acute renal failure in critically ill patients: a multinational, multicenter study.

Authors:  Shigehiko Uchino; John A Kellum; Rinaldo Bellomo; Gordon S Doig; Hiroshi Morimatsu; Stanislao Morgera; Miet Schetz; Ian Tan; Catherine Bouman; Ettiene Macedo; Noel Gibney; Ashita Tolwani; Claudio Ronco
Journal:  JAMA       Date:  2005-08-17       Impact factor: 56.272

3.  Piecewise analysis of patient survival after onset of AKI.

Authors:  Jane H Zhang; Paul M Palevsky; Glenn M Chertow; John Hartigan; Theresa Z O'Connor; Peter Guarino; Bingqing Zhou
Journal:  Clin J Am Soc Nephrol       Date:  2013-06-27       Impact factor: 8.237

Review 4.  c-MYC: more than just a matter of life and death.

Authors:  Stella Pelengaris; Mike Khan; Gerard Evan
Journal:  Nat Rev Cancer       Date:  2002-10       Impact factor: 60.716

Review 5.  The Role of Wnt Signalling in Angiogenesis.

Authors:  Jun Jun Olsen; Sebastian Öther-Gee Pohl; Abhijeet Deshmukh; Malini Visweswaran; Natalie C Ward; Frank Arfuso; Mark Agostino; Arun Dharmarajan
Journal:  Clin Biochem Rev       Date:  2017-11

6.  Aptamer-based multiplexed proteomic technology for biomarker discovery.

Authors:  Larry Gold; Deborah Ayers; Jennifer Bertino; Christopher Bock; Ashley Bock; Edward N Brody; Jeff Carter; Andrew B Dalby; Bruce E Eaton; Tim Fitzwater; Dylan Flather; Ashley Forbes; Trudi Foreman; Cate Fowler; Bharat Gawande; Meredith Goss; Magda Gunn; Shashi Gupta; Dennis Halladay; Jim Heil; Joe Heilig; Brian Hicke; Gregory Husar; Nebojsa Janjic; Thale Jarvis; Susan Jennings; Evaldas Katilius; Tracy R Keeney; Nancy Kim; Tad H Koch; Stephan Kraemer; Luke Kroiss; Ngan Le; Daniel Levine; Wes Lindsey; Bridget Lollo; Wes Mayfield; Mike Mehan; Robert Mehler; Sally K Nelson; Michele Nelson; Dan Nieuwlandt; Malti Nikrad; Urs Ochsner; Rachel M Ostroff; Matt Otis; Thomas Parker; Steve Pietrasiewicz; Daniel I Resnicow; John Rohloff; Glenn Sanders; Sarah Sattin; Daniel Schneider; Britta Singer; Martin Stanton; Alana Sterkel; Alex Stewart; Suzanne Stratford; Jonathan D Vaught; Mike Vrkljan; Jeffrey J Walker; Mike Watrobka; Sheela Waugh; Allison Weiss; Sheri K Wilcox; Alexey Wolfson; Steven K Wolk; Chi Zhang; Dom Zichi
Journal:  PLoS One       Date:  2010-12-07       Impact factor: 3.240

7.  Immune antibodies and helminth products drive CXCR2-dependent macrophage-myofibroblast crosstalk to promote intestinal repair.

Authors:  Julia Esser-von Bieren; Beatrice Volpe; Duncan B Sutherland; Jérôme Bürgi; J Sjef Verbeek; Benjamin J Marsland; Joseph F Urban; Nicola L Harris
Journal:  PLoS Pathog       Date:  2015-03-25       Impact factor: 6.823

8.  Aptamer-Based Proteomics Identifies Mortality-Associated Serum Biomarkers in Dialysis-Dependent AKI Patients.

Authors:  Li-Rong Yu; Jinchun Sun; Jaclyn R Daniels; Zhijun Cao; Laura Schnackenberg; Devasmita Choudhury; Paul M Palevsky; Jennie Z Ma; Richard D Beger; Didier Portilla
Journal:  Kidney Int Rep       Date:  2018-05-03

9.  Predicting Renal Recovery After Dialysis-Requiring Acute Kidney Injury.

Authors:  Benjamin J Lee; Chi-Yuan Hsu; Rishi Parikh; Charles E McCulloch; Thida C Tan; Kathleen D Liu; Raymond K Hsu; Leonid Pravoverov; Sijie Zheng; Alan S Go
Journal:  Kidney Int Rep       Date:  2019-01-28

10.  tRNA synthetase counteracts c-Myc to develop functional vasculature.

Authors:  Yi Shi; Xiaoling Xu; Qian Zhang; Guangsen Fu; Zhongying Mo; George S Wang; Shuji Kishi; Xiang-Lei Yang
Journal:  Elife       Date:  2014-06-17       Impact factor: 8.140

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  1 in total

1.  Serum Protein Signatures Using Aptamer-Based Proteomics for Minimal Change Disease and Membranous Nephropathy.

Authors:  Daniel A Muruve; Hanna Debiec; Simon T Dillon; Xuesong Gu; Emmanuelle Plaisier; Handan Can; Hasan H Otu; Towia A Libermann; Pierre Ronco
Journal:  Kidney Int Rep       Date:  2022-04-14
  1 in total

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