| Original article | DTMUV virus | Duck | To study the role of autophagy in facilitating DTMUV replication “in vivo” | • Western blot (WB)• Hematoxylin and eosin staining• Immunohistochemistry• RT-PCR | • DTMUV trigged autophagy, which facilitates its replication inside the cells and induces pathological symptoms |
Hu et al.
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| Original article | DEV virus | Duck | To elucidate the roles of US1 and its NLS in DEV replication “in vivo” | • RT-PCR• WB• Immunofluorescence assay | • The DEV US1 ORF is 990 bp• Molecular mass of the ICP22 protein is ~57 kDa• ICP22 contains a classical NLS at 305-312AA that is essential for its localization to the nucleus• DEV US1 is non-essential for host infection but associated with a severe growth deficit in vitro.
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Li et al.
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| Original article |
M. fortuitum
| Zebrafish | To study the disease pathogenesis of M. fortuitum infections | • Creation of fluorescent M. fortuitum
• Morpholino Injection and CFTR Knockdown• Zebrafish Microinjection and Infection• Zebrafish live imaging | • Zebrafish embryos form granulomas as early as 2 days post-infection• Transient macrophage depletion in zebrafish led to rapid embryo death with increased bacterial extracellular cord formation |
Johansen and Kremer
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| Original article |
G. mellonella larvae |
S. aureus
| To study the function of sRNAs during S. aureus infection “in vivo” | • Bacterial growth in the larvae• Immunohistochemistry• Bacterial isolation and RNA extraction• Monitoring RNA expression levels | • G. mellonella larvae is a suitable model to study sRNA-mediated pathogenesis in S. aureus
• sprD and sprC increased during infection and associated with mortality• rnaIII expression remained barely detectable over time |
Ménard et al.
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| Original article |
P.berghei
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A.gambiae
| Study the function of CLIPB10 in protease cascades “in vivo” using A. gambiae as a model | • RT-PCR• Activation of recombinant zymogens• Substrate screening of active CLIPB10Xa
• MALDI-TOF MS Analysis | • proPO plays an essential role in the cuticular melanization in insects• CLIPB10 is required for the melanization of ookinete stages of the rodent malaria parasite P. berghei.
• Recombinant serpin 2 protein formed a stable protein complex with CLIPB10 protein |
Zhang et al.
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| Original article |
C. elegans
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E. faecium
| To analyze a panel of lab strains of E. faecium with deletions of targeted virulence factor “in vivo” using C. elegans as a model | • C. elegans - Enterococcus pathogenesis assays• Colony forming unit assay• Genomic analysis• Microscopy• RNA interference protocol | • C. elegans is a high throughput infection model for studying the pathogensis of E. facium
• Removal of certain virulence factors (e.g., Δfms15) was sufficient to affect the virulence of E. faecium
• Multiple deletions were required to affect pathogenesis, suggesting that host-pathogen interactions are multifactorial. |
Revtovich et al.
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| Original article | Mouse |
Helicobacter, Clostridium, Lactobacillus, Klebsiella, Rodentibacter and Enterococcus
| To study the effect of Autoinducer-2 on the process of necrotizing enterocolitis mouse model | • Histology• Immunohistochemistry• Mouse Intestinal Content Acquisition and AI-2 Activity Measurement• Fecal sample microbiota analysisELISART-PCR-WB | • The AI-2 level was significantly decreased in the NEC group• In the NA (NEC + AI-2) group; the intestinal injury scores, expression of TLR4, NF-kB, and proinflammatory factors were reduced, and expression of anti-inflammatory factor was increased compared to NEC group• At the phylum level, the Proteobacteria abundance in the NA group was significantly increased.• At the genus level, Helicobacter and Clostridium exhibited significantly greater abundance in the NEC group compared to the other two groups |
Ji et al.
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| Review | Drosophila | Different pathogens | Gaining proper insight into host–pathogen interactions using drosophila as a model | • Not applicable | • In vivo drosophila studies enabled the identification of humoral and cell-mediated host defense factors against a wide array of intracellular and extracellular pathogens |
Younes et al.
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