Literature DB >> 34907912

Deciphering regulatory protein activity in human pancreatic islets via reverse engineering of single-cell sequencing data.

Yumi Imai1,2,3.   

Abstract

The loss of functional β cell mass contributes to development and progression of type 2 diabetes (T2D). However, the molecular mechanisms differentiating islet dysfunction in T2D from nondiabetic states remain elusive. In this issue of the JCI, Son et al. applied reverse engineering to obtain the activity of gene expression regulatory proteins from single-cell RNA sequencing data of nondiabetic and T2D human islets. The authors identify unique patterns of regulatory protein activities associated with T2D. Furthermore, BACH2 emerged as a potential transcription factor that drives activation of T2D-associated regulatory proteins in human islets.

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Year:  2021        PMID: 34907912      PMCID: PMC8670832          DOI: 10.1172/JCI154482

Source DB:  PubMed          Journal:  J Clin Invest        ISSN: 0021-9738            Impact factor:   14.808


  20 in total

Review 1.  Islet beta cell failure in type 2 diabetes.

Authors:  Marc Prentki; Christopher J Nolan
Journal:  J Clin Invest       Date:  2006-07       Impact factor: 14.808

2.  Metabolic inflexibility impairs insulin secretion and results in MODY-like diabetes in triple FoxO-deficient mice.

Authors:  Ja Young Kim-Muller; Shangang Zhao; Shekhar Srivastava; Yves Mugabo; Hye-Lim Noh; YoungJung R Kim; S R Murthy Madiraju; Anthony W Ferrante; Edward Y Skolnik; Marc Prentki; Domenico Accili
Journal:  Cell Metab       Date:  2014-09-25       Impact factor: 27.287

Review 3.  T Cell Fates Zipped Up: How the Bach2 Basic Leucine Zipper Transcriptional Repressor Directs T Cell Differentiation and Function.

Authors:  Martin J Richer; Mark L Lang; Noah S Butler
Journal:  J Immunol       Date:  2016-08-15       Impact factor: 5.422

Review 4.  Single-Cell RNA-Seq of the Pancreatic Islets--a Promise Not yet Fulfilled?

Authors:  Yue J Wang; Klaus H Kaestner
Journal:  Cell Metab       Date:  2018-12-20       Impact factor: 27.287

5.  Reverse engineering of regulatory networks in human B cells.

Authors:  Katia Basso; Adam A Margolin; Gustavo Stolovitzky; Ulf Klein; Riccardo Dalla-Favera; Andrea Califano
Journal:  Nat Genet       Date:  2005-03-20       Impact factor: 38.330

6.  β-cell failure in type 2 diabetes: postulated mechanisms and prospects for prevention and treatment.

Authors:  Philippe A Halban; Kenneth S Polonsky; Donald W Bowden; Meredith A Hawkins; Charlotte Ling; Kieren J Mather; Alvin C Powers; Christopher J Rhodes; Lori Sussel; Gordon C Weir
Journal:  J Clin Endocrinol Metab       Date:  2014-04-08       Impact factor: 5.958

Review 7.  Islet inflammation: a unifying target for diabetes treatment?

Authors:  Yumi Imai; Anca D Dobrian; Margaret A Morris; Jerry L Nadler
Journal:  Trends Endocrinol Metab       Date:  2013-02-26       Impact factor: 12.015

8.  Integration of single-cell datasets reveals novel transcriptomic signatures of β-cells in human type 2 diabetes.

Authors:  Emanuele Bosi; Lorella Marselli; Carmela De Luca; Mara Suleiman; Marta Tesi; Mark Ibberson; Decio L Eizirik; Miriam Cnop; Piero Marchetti
Journal:  NAR Genom Bioinform       Date:  2020-11-20

9.  The transcriptional landscape of mouse beta cells compared to human beta cells reveals notable species differences in long non-coding RNA and protein-coding gene expression.

Authors:  Christopher Benner; Talitha van der Meulen; Elena Cacéres; Kristof Tigyi; Cynthia J Donaldson; Mark O Huising
Journal:  BMC Genomics       Date:  2014-07-22       Impact factor: 3.969

10.  Aldehyde dehydrogenase 1a3 defines a subset of failing pancreatic β cells in diabetic mice.

Authors:  Ja Young Kim-Muller; Jason Fan; Young Jung R Kim; Seung-Ah Lee; Emi Ishida; William S Blaner; Domenico Accili
Journal:  Nat Commun       Date:  2016-08-30       Impact factor: 14.919

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