| Literature DB >> 34904022 |
Dalong Wei1,2, Xiaoling Lan1,3, Zhiqun Huang2, Qiang Tang2, Zechen Wang4, Yanfei Ma1,5, Liuzhi Wei4,6, Qiuju Wei4,6, Jingjie Zhao7, Jiajia Shen4, Siyuan He4, Jian Song4, Lingzhang Meng4, Qianli Tang1,8.
Abstract
Sarcoma is a rare and an extremely aggressive form of cancer that originates from mesenchymal cells. Pyroptosis exerts a dual effect on tumours by inhibiting tumour cell proliferation while creating a microenvironment suitable for tumour cell development and proliferation. However, the significance of pyroptosis-related gene (PRG) expression in sarcoma has not yet been evaluated. Here, we conduct a retrospective analysis to examine PRG expression in 256 sarcoma samples from The Cancer Genome Atlas database. We identified the PRGs that had a significant correlation with overall patient survival in sarcoma by performing a univariate Cox regression analysis. Subsequently, we conducted a LASSO regression analysis and created a risk model for a six-PRG signature. As indicated from the Kaplan-Meier analysis, this signature revealed a significant difference between high- and low-risk sarcoma patients. A receiver operating characteristic curve analysis confirmed that this signature could predict overall patient survival in sarcoma patients with high sensitivity and specificity. Gene ontology annotation and Kyoto Encyclopaedia of Genes and Genomes pathway enrichment analyses revealed that five independent PRGs were closely associated with increased immune activity. Moreover, we also deciphered that increased number of immune cells infiltrated the tumour microenvironment in sarcoma. In brief, the PRG signature can effectively act as novel prognostic biomarker for sarcoma patients and is associated with the tumour immune microenvironment.Entities:
Mesh:
Substances:
Year: 2021 PMID: 34904022 PMCID: PMC8665299 DOI: 10.1155/2021/9919842
Source DB: PubMed Journal: Dis Markers ISSN: 0278-0240 Impact factor: 3.434
Figure 1Prognostic capability of six-pyroptosis-related gene (PRG) signature. (a) Forest plot presenting the results of a univariate analysis of PRGs associated with overall survival (P < 0.05). (b) LASSO regression analysis of seven PRGs. (c) Cross-validation to fine-tune the parameter selection in the LASSO regression. (d) Sarcoma patients classified into Risk-L and Risk-H cohorts based on the mean risk score. (e) Principal component analysis of sarcoma patients based on the risk score. (f) Survival status distribution of sarcoma patients. (g) Kaplan–Meier curves for the overall survival of sarcoma cases indicated that the prognosis of the Risk-H cohort is worse than of the Risk-L cohort. (h) Receiver operating characteristic (ROC) curves depict the sensitivity and specificity of the risk score model.
Figure 2Individual prognostic significance of genes in six-pyroptosis-related gene (PRG) signature. Survival investigation indicated that sarcoma patients with high expression of PVCARD (a), CASP1 (b), TNF (c), IL-18 (d), and PLCG1 (e) had a better clinical prognosis.
Figure 3Development and validation of five-pyroptosis-related gene (PRG) nomogram model. (a) Nomogram plot was used to visualize the result of multiple-variate Cox regression investigation of a five-PRG signature. (b) The calibration plot was used to validate the accuracy of the risk predicted by the nomogram with the actual values.
Figure 4Gene ontology (GO) enrichment and Kyoto Encylopaedia of Genes and Genomes (KEGG) pathway analysis of five-pyroptosis-related genes (PRGs). (a) Heat map for the differential expression of five PRGs in the Risk-H and Risk-L cohorts. (b) Bar plot for GO enrichment and KEGG pathways associated with immunity.
Figure 5Immune infiltration landscape in Risk-H and Risk-L cohorts. (a) Relative percentages of 22 immune cell types in respective sarcoma samples. (b) Heat map of 22 immune cell types in The Cancer Genome Atlas sarcoma cohort.
Figure 6Immune cell components of tumour microenvironment in sarcoma. (a) Comparison of 22 immune cell types between the two risk cohorts. (b) Comparison of four major classes of immune cell types in sarcoma.
Figure 7A correlation matrix consisting of all 22 immune cell types. Immune cell types may be seen on both the horizontal and vertical axes. Composition of immune cell types (closer to white means lower correlation, deep blue means strong negative correlation, and deep red means strong positive correlation).