| Literature DB >> 34899944 |
Ying Qu1, Xiangyang Yang1, Jingxiang Li1, Shuxin Zhang1, Shiying Li1, Mengyuan Wang1, Lu Zhou2, Zhiying Wang1, Zi Lin1, Yuzhang Yin1, Jinlong Liu1, Nan Wang1, Yang Yang1.
Abstract
OBJECTIVE: This study aimed to investigate the possible mechanism of the Zhishi and Baizhu herb pair in the treatment of gastric cancer by means of network pharmacology and molecular docking and to provide a theoretical basis for experiments and clinical application of traditional Chinese medicine for treating gastric cancer.Entities:
Year: 2021 PMID: 34899944 PMCID: PMC8660205 DOI: 10.1155/2021/2311486
Source DB: PubMed Journal: Evid Based Complement Alternat Med ISSN: 1741-427X Impact factor: 2.629
The information of 743 candidate compounds in the Zhishi-Baizhu herb pair.
| Herb | Mol ID | Molecule name | OB (%) | DL | Target amount |
|---|---|---|---|---|---|
| ZS | MOL013277 | Isosinensetin | 51.15 | 0.44 | 27 |
| ZS | MOL013279 | 5,7,4′-Trimethylapigenin | 39.83 | 0.3 | 16 |
| ZS | MOL013428 | Isosakuranetin-7-rutinoside | 41.24 | 0.72 | 1 |
| ZS | MOL013430 | Prangenin | 43.6 | 0.29 | 3 |
| ZS | MOL013433 | Prangenin hydrate | 72.63 | 0.29 | 1 |
| ZS | MOL013435 | Poncimarin | 63.62 | 0.35 | 4 |
| ZS | MOL013436 | Isoponcimarin | 63.28 | 0.31 | 4 |
| ZS | MOL013437 | 6-Methoxyaurapten | 31.24 | 0.3 | 11 |
| ZS | MOL013440 | Citrusin B | 40.8 | 0.71 | 1 |
| ZS | MOL001798 | Neohesperidin_qt | 71.17 | 0.27 | 7 |
| ZS | MOL001803 | Sinensetin | 50.56 | 0.45 | 21 |
| ZS | MOL001941 | Ammidin | 34.55 | 0.22 | 8 |
| ZS | MOL002914 | Eriodyctiol (flavanone) | 41.35 | 0.24 | 8 |
| ZS | MOL004328 | Naringenin | 59.29 | 0.21 | 37 |
| ZS | MOL005100 | 5,7-Dihydroxy-2-(3-hydroxy-4-methoxyphenyl)chroman-4-one | 47.74 | 0.27 | 10 |
| ZS | MOL005828 | Nobiletin | 61.67 | 0.52 | 35 |
| ZS | MOL005849 | Didymin | 38.55 | 0.24 | 13 |
| ZS | MOL000006 | Luteolin | 36.16 | 0.25 | 57 |
| ZS | MOL007879 | Tetramethoxyluteolin | 43.68 | 0.37 | 32 |
| ZS | MOL009053 | 4-[(2S,3R)-5-[(E)-3-Hydroxyprop-1-enyl]-7-methoxy-3-methylol-2,3-dihydrobenzofuran-2-yl]-2-methoxy-phenol | 50.76 | 0.39 | 11 |
| BZ | MOL000020 | 12-Senecioyl-2E,8E,10E-atractylentriol | 62.4 | 0.22 | 184 |
| BZ | MOL000021 | 14-Acetyl-12-senecioyl-2E,8E,10E-atractylentriol | 60.31 | 0.31 | 114 |
| BZ | MOL000022 | 14-Acetyl-12-senecioyl-2E,8Z,10E-atractylentriol | 63.37 | 0.3 | 115 |
| BZ | MOL000028 |
| 39.51 | 0.76 | 1 |
| BZ | MOL000033 | (3S,8S,9S,10R,13R,14S,17R)-10,13-Dimethyl-17-[(2R,5S)-5-propan-2-yloctan-2-yl]-2,3,4,7,8,9,11,12,14,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthren-3-ol | 36.23 | 0.78 | 1 |
| BZ | MOL000049 | 3 | 54.07 | 0.22 | 16 |
| BZ | MOL000072 | 8 | 35.95 | 0.21 | 5 |
Figure 1Venn diagram of the Zhishi-Baizhu (ZS-BZ) herb pair (medicine genes) and gastric cancer (disease genes) intersection targets. The 120 overlapping targets represent the candidate targets of the ZS-BZ herb pair against gastric cancer.
Figure 2Protein-protein interaction networks of the Zhishi-Baizhu herb pair and gastric cancer.
Figure 3Drug-target interaction of the Zhishi-Baizhu (ZS-BZ) herb pair and gastric cancer. Red triangle represents gastric cancer, dark blue round rectangles represent the herbs ZS and BZ, and grass green ellipses represent potential common targets of the ZS-BZ herb pair and gastric cancer.
Figure 4Top 20 key targets in PPI network.
Key targets in protein-protein interaction network which are greater than the average value (top 20).
| Rank | Name | Degree |
|---|---|---|
| 1 | AKT1 | 85 |
| 2 | EGFR | 75 |
| 2 | IL-6 | 75 |
| 4 | VEGFA | 74 |
| 5 | MAPK3 | 73 |
| 6 | CASP3 | 72 |
| 7 | JUN | 70 |
| 8 | STAT3 | 69 |
| 9 | CCND1 | 67 |
| 10 | MAPK8 | 66 |
| 11 | ERBB2 | 61 |
| 12 | ESR1 | 60 |
| 12 | MMP9 | 60 |
| 14 | PTGS2 | 58 |
| 15 | MAPK14 | 56 |
| 16 | BCL2L1 | 53 |
| 16 | MTOR | 53 |
| 18 | CREB1 | 50 |
| 19 | MMP2 | 48 |
| 20 | MDM2 | 47 |
Figure 5(a) Results of biological process (top 15). (b) Results of cellular components (top 16). (c) Results of molecular function (top 15).
Figure 6(a) Results of KEGG enrichment analysis (top 20). (b) KEGG pathway analysis of PI3K-Akt signaling pathway of the Zhishi-Baizhu herb pair in the regulation of gastric cancer. Red rectangles represent the targets of regulation roles. (c) KEGG pathway analysis of the PI3K-Akt signaling pathway of the Zhishi-Baizhu herb pair in the regulation of gastric cancer. Green rectangles represent the targets of potential roles. (d) KEGG pathway analysis of IL-17 signaling pathway of Zhishi-Baizhu herb pair in the regulation of gastric cancer. Red rectangles represent the targets of regulation roles. (e) KEGG pathway analysis of IL-17 signaling pathway of Zhishi-Baizhu herb pair in the regulation of gastric cancer. Green rectangles represent the targets of potential roles.
Results of KEGG enrichment analysis (top 20).
| ID | Description |
|
| Count |
|---|---|---|---|---|
| hsa05215 | Prostate cancer | 4.71 | 7.21 | 21 |
| hsa01522 | Endocrine resistance | 5.93 | 7.21 | 21 |
| hsa05212 | Pancreatic cancer | 4.76 | 3.85 | 18 |
| hsa05163 | Human cytomegalovirus infection | 1.99 | 1.16 | 25 |
| hsa04151 | PI3K-Akt signalling pathway | 2.39 | 1.16 | 30 |
| hsa05167 | Kaposi's sarcoma-associated herpesvirus infection | 7.92 | 3.21 | 23 |
| hsa05223 | Non-small cell lung cancer | 1.15 | 4.00 | 16 |
| hsa01524 | Platinum drug resistance | 1.46 | 4.44 | 16 |
| hsa05161 | Hepatitis B | 2.96 | 7.99 | 21 |
| hsa05222 | Small cell lung cancer | 3.78 | 8.53 | 17 |
| hsa05219 | Bladder cancer | 3.86 | 8.53 | 13 |
| hsa04933 | AGE-RAGE signaling pathway in diabetic complications | 1.63 | 3.30 | 17 |
| hsa05210 | Colorectal cancer | 2.32 | 4.26 | 16 |
| hsa05169 | Epstein-Barr virus infection | 2.46 | 4.26 | 22 |
| hsa05162 | Measles | 2.63 | 4.26 | 19 |
| hsa01521 | EGFR tyrosine kinase inhibitor resistance | 1.16 | 1.75 | 15 |
| hsa04210 | Apoptosis | 2.38 | 3.41 | 18 |
| hsa05166 | Human T-cell leukaemia virus 1 infection | 1.29 | 1.74 | 21 |
| hsa04657 | IL-17 signaling pathway | 1.68 | 2.07 | 15 |
| hsa05145 | Toxoplasmosis | 1.70 | 2.07 | 16 |
The binding energies of top 20 key target proteins with luteolin and naringenin.
| Target | PDB ID | Luteolin (kcal/mol) | Naringenin (kcal/mol) |
|---|---|---|---|
| AKT1 | 4gah | −7.45 | −6.18 |
| EGFR | 4qvx | −6.42 | −5.83 |
| IL-6 | 6 mg3 | −6.86 | −5.51 |
| VEGFA | 6v7k | −6.03 | −6.63 |
| MAPK3 | 4qtb | −6.52 | −5.2 |
| CASP3 | 4jqy | −6.16 | −6.07 |
| JUN | 3v3v | −6.2 | −6.06 |
| STAT3 | 6smb | −7.01 | −5.05 |
| CCND1 | 2w9f | −6.84 | −5.86 |
| MAPK8 | 3o2m | −5.77 | −5.04 |
| ERBB2 | 4hrn | −5.1 | −5.41 |
| ESR1 | 1a52 | −5.42 | −5.77 |
| MMP9 | 1l6j | −6.78 | −6.45 |
| PTGS2 | 5ikr | −6.36 | −5.8 |
| MAPK14 | 5omh | −7.03 | −6.77 |
| BCL2L1 | 4qvx | −7.59 | −7.41 |
| MTOR | 3qar | −6.36 | −5.35 |
| CREB1 | 1ci6 | −4.21 | −4.39 |
| MMP2 | 1rtg | −6.67 | −6.06 |
| MDM2 | 3lbk | −5.78 | −5.79 |
Figure 7(a) Luteolin with AKT1. (b) Luteolin with MMP9. (c) Luteolin with IL-6. (d) Luteolin with CCND1. (e) Luteolin with BCL2. (f) Luteolin with MTOR. (g) Luteolin with MDM2. (h) Naringenin with AKT1. (i) Naringenin with MMP9. (j) Naringenin with IL-6. (k) Naringenin with CCND1. (l) Naringenin with BCL2. (m) Naringenin with MTOR. (n) Naringenin with MDM2.