| Literature DB >> 34899852 |
Parth D Shah1, C M Schooling1, Luisa N Borrell1.
Abstract
While the association of periodontitis with Type II diabetes (T2DM) is well-established, the causal relationship remains uncertain. We examined the causal association of periodontitis with glycemic traits (HbA1c, fasting glucose, and fasting insulin) and T2DM using Mendelian randomization (MR) taking advantage of large genome-wide association studies of European and East Asian adults, i.e., the UK Biobank (n ≈ 350,000) (HbA1c), trans-ancestral MAGIC (HbA1c, fasting glucose, and insulin), and DIAMANTE (74,124 cases/824,006 controls), and AGEN for T2DM in Europeans and East Asians, respectively. Periodontitis was instrumented using single-nucleotide polymorphisms (SNPs), strongly and independently predicting liability to periodontitis in each ancestry group. SNP-specific Wald estimates were combined using inverse variance weighting. Sensitivity analyses were performed using the weighted median and MR-Egger with meta-analysis of MR estimates for Europeans and East Asians. Genetically instrumented liability to periodontitis was not associated with glycemic traits or T2DM in either ancestry or when ancestry specific estimates were meta-analyzed. Our findings do not support a causal association of liability to periodontitis with glycemic traits or T2DM. However, further research is required confirming these findings among other racial/ethnic groups, especially groups who carry a heavy burden of both periodontitis and T2DM.Entities:
Keywords: causal analysis; diabetes; epidemiology; glycemic control traits; mendelian randomization; periodontitis
Year: 2021 PMID: 34899852 PMCID: PMC8660586 DOI: 10.3389/fgene.2021.767577
Source DB: PubMed Journal: Front Genet ISSN: 1664-8021 Impact factor: 4.599
Characteristics of the SNPs predicting liability to periodontitis selected as instrumental variables for the Mendelian randomization analysis in Europeans and East Asians.
| Population | SNP | locus | Gene | Effect allele | Non effect allele | Effect allele frequency | Beta | Standard error | Odds ratio | 95% confidence interval |
|---|---|---|---|---|---|---|---|---|---|---|
| European | rs1537415 | 9q34.3 | GLT6D1 | C | G | 0.41 | 0.4637 | 0.0797 | 1.59 | (1.36, 1.86) |
| rs4284742 | 19q13.41 | SIGLEC5 | G | A | 0.76 | 0.2927 | 0.0521 | 1.34 | (1.21, 1.48) | |
| rs2738058 | 8p23.1 | DEFA1A3 | T | C | 0.43 | 0.2469 | 0.0415 | 1.28 | (1.18, 1.39) | |
| rs16870060 | 8q22.3 | MTND1P5 | G | T | 0.91 | 0.3075 | 0.0513 | 1.36 | (1.23, 1.50) | |
| rs729876 | 16p13.12 | LOC107984137 | T | C | 0.82 | 0.2151 | 0.0384 | 1.24 | (1.15, 1.34) | |
| East Asians | rs10737249 | 1 | COLGALT2 | C | T | 0.91 | 0.2329 | 0.0457 | ||
| rs192911809 | 12 | SRRM4 | A | G | 0.01 | 1.2330 | 0.2525 | |||
| rs117963472 | 18 | RP11-161I6.2 | G | A | 0.02 | 0.4169 | 0.0903 | |||
| rs118016840 | 21 | DSCR8 | G | C | 0.01 | 0.6304 | 0.1247 | |||
| rs9812091 | 3 | CLSTN2 | G | A | 0.45 | 0.1218 | 0.0252 | |||
| rs7756559 | 6 | RP1-153P14.7 | T | C | 0.01 | 0.5933 | 0.1281 | |||
| rs35067614 | 7 | NECAP1P1 | G | T | 0.18 | -0.1622 | 0.0333 |
FIGURE 1Leave-out-one plots for associations of liability to periodontitis with HbA1c, fasting glucose, fasting insulin, and diabetes in people of European and East Asian descent.
Mendelian randomization estimates for liability to periodontitis on HbA1C, fasting glucose and fasting insulin, and T2DM using all five or four SNPs to predict periodontitis obtained from Europeans for the MR estimates in Europeans and seven SNPs to predict periodontitis in East Asians for the MR estimates in East Asians.
| Outcome | Data source | Method | #SNPs | Beta | 95% confidence interval |
| Cochran’s | MR-Egger | |
|---|---|---|---|---|---|---|---|---|---|
| Intercept |
| ||||||||
| HbA1C (effect size) | United Kingdom Biobank | IVW | 5 | −0.001 | −0.008 to 0.006 | 0.74 | 1.38 (0.85) | 0% | |
| 4 | 0.001 | −0.010 to 0.011 | 0.91 | 1.17 (0.76) | 0% | ||||
| WM | 5 | −0.003 | −0.011 to 0.006 | 0.56 | |||||
| 4 | −0.002 | −0.014 to 0.011 | 0.81 | ||||||
| MRE | 5 | −0.007 | −0.032 to 0.018 | 0.58 | 1.14 (0.77) | 0.63 | 71.0% | ||
| 4 | −0.006 | −0.089 to 0.077 | 0.89 | 1.14 (0.56) | 0.88 | 14.9% | |||
| MAGIC | IVW | 7 | −0.007 | −0.024 to 0.010 | 0.45 | 7.65 (0.26) | 21.6% | ||
| East Asians | WM | 7 | −0.014 | −0.033 to 0.006 | 0.18 | ||||
| MRE | 7 | −0.018 | −0.047 to 0.012 | 0.24 | 6.55 (0.35) | 0.36 | 0% | ||
| Fasting glucose (mmol/L) | MAGIC | IVW | 5 | −0.001 | −0.007 to 0.005 | 0.74 | 1.81 (0.77) | 0% | |
| Europeans | 4 | −0.003 | −0.011 to 0.006 | 0.55 | 1.55 (0.67) | 0% | |||
| WM | 5 | 0.0004 | −0.007 to 0.007 | 0.91 | |||||
| 4 | −0.002 | −0.013 to 0.008 | 0.71 | ||||||
| MRE | 5 | −0.001 | −0.021to 0.020 | 0.96 | 1.81 (0.62) | 0.97 | 71.4% | ||
| 4 | −0.043 | -0.112 to 0.025 | 0.22 | 0.19 (0.91) | 0.24 | 16.7% | |||
| MAGIC | IVW | 7 | 0.023 | −0.005 to 0.051 | 0.11 | 9.39 (0.15) | 36.1 | ||
| East Asians | WM | 7 | 0.018 | −0.013 to 0.050 | 0.26 | ||||
| MRE | 7 | 0.037 | −0.013 to 0.087 | 0.15 | 8.57 (0.13) | 0.49 | 0% | ||
| Fasting insulin (pmol/L) | MAGIC | IVW | 5 | −0.002 | −0.010 to 0.006 | 0.62 | 5.3 (0.26) | 23.8% | |
| Europeans | 4 | −0.008 | −0.018 to 0.002 | 0.12 | 2.8 (0.43) | 0% | |||
| WM | 5 | 0.002 | −0.006 to 0.010 | 0.66 | |||||
| 4 | −0.006 | −0.019 to 0.007 | 0.34 | ||||||
| MRE | 5 | 0.013 | −0.012 to 0.037 | 0.31 | 3.5 (0.32) | 0.22 | 72.5% | ||
| 4 | −0.023 | −0.113 to 0.067 | 0.62 | 2.6 (0.27) | 0.74 | 15.6% | |||
| MAGIC | IVW | 7 | 0.010 | −0.027 to 0.047 | 0.58 | 11.7 (0.07) | 48.7% | ||
| East Asians | WM | 7 | 0.004 | −0.035 to 0.042 | 0.85 | ||||
| MRE | 7 | 0.045 | −0.013 to 0.102 | 0.13 | 8.21 (0.35) | 0.14 | 0% | ||
|
| |||||||||
| Diabetes | DIAMANTE | IVW | 5 | 1.02 | 1.00 to 1.04 | 0.08 | 3.40 (0.49) | 0% | |
| Europeans | 4 | 1.03 | 1.00 to 1.06 | 0.053 | 2.36 (0.50) | 0% | |||
| WM | 5 | 1.02 | 0.99 to 1.04 | 0.18 | |||||
| 4 | 1.03 | 1.00 to 1.07 | 0.06 | ||||||
| MRE | 5 | 1.00 | 0.93 to 1.07 | 0.99 | 3.12 (0.37) | 0.60 | 71.8% | ||
| 4 | 1.17 | 0.93 to 1.47 | 0.18 | 1.15 (0.56) | 0.27 | 22.5% | |||
| Finngen | IVW | 4 | 0.97 | 0.92 to 1.03 | 0.34 | 2.10 (0.55) | 0% | ||
| Europeans | 3 | 0.96 | 0.89 to 1.03 | 0.27 | 1.72 (0.42) | 0% | |||
| WM | 4 | 0.98 | 0.92 to 1.05 | 0.57 | |||||
| 3 | 0.96 | 0.87 to 1.06 | 0.39 | ||||||
| MRE | 4 | 1.07 | 0.88 to 1.32 | 0.49 | 1.16 (0.56) | 0.33 | 62.3% | ||
| 3 | 1.60 | 0.71 to 3.64 | 0.26 | 0.18 (0,67) | 0.22 | 0% | |||
| AGEN | IVW | 7 | 1.00 | 0.96 to 1.03 | 0.91 | 5.38 (0.50) | 0% | ||
| East Asians | WM | 7 | 0.98 | 0.94, to 1.03 | 0.45 | ||||
| MRE | 7 | 0.97 | 0.92 to 1.03 | 0.32 | 4.01 (0.55) | 0.24 | 0% | ||
| Meta-analysis | Of IVW estimates | 12 | 1.01 | 0.99 to 1.03 | 0.28 | ||||
| 11 | 1.01 | 0.99 to 1.03 | 0.30 | ||||||
Rs729876 not available.