Literature DB >> 34899005

A hierarchical integrative group least absolute shrinkage and selection operator for analyzing environmental mixtures.

Jonathan Boss1, Alexander Rix1, Yin-Hsiu Chen2, Naveen N Narisetty3, Zhenke Wu1, Kelly K Ferguson4, Thomas F McElrath5, John D Meeker6, Bhramar Mukherjee1.   

Abstract

Environmental health studies are increasingly measuring multiple pollutants to characterize the joint health effects attributable to exposure mixtures. However, the underlying dose-response relationship between toxicants and health outcomes of interest may be highly nonlinear, with possible nonlinear interaction effects. Existing penalized regression methods that account for exposure interactions either cannot accommodate nonlinear interactions while maintaining strong heredity or are computationally unstable in applications with limited sample size. In this paper, we propose a general shrinkage and selection framework to identify noteworthy nonlinear main and interaction effects among a set of exposures. We design hierarchical integrative group least absolute shrinkage and selection operator (HiGLASSO) to (a) impose strong heredity constraints on two-way interaction effects (hierarchical), (b) incorporate adaptive weights without necessitating initial coefficient estimates (integrative), and (c) induce sparsity for variable selection while respecting group structure (group LASSO). We prove sparsistency of the proposed method and apply HiGLASSO to an environmental toxicants dataset from the LIFECODES birth cohort, where the investigators are interested in understanding the joint effects of 21 urinary toxicant biomarkers on urinary 8-isoprostane, a measure of oxidative stress. An implementation of HiGLASSO is available in the higlasso R package, accessible through the Comprehensive R Archive Network.

Entities:  

Keywords:  Environmental exposures; Group LASSO; Interaction; Nonlinearity; Strong heredity

Year:  2021        PMID: 34899005      PMCID: PMC8664243          DOI: 10.1002/env.2698

Source DB:  PubMed          Journal:  Environmetrics        ISSN: 1099-095X            Impact factor:   1.527


  28 in total

1.  Urinary phthalate metabolites in relation to biomarkers of inflammation and oxidative stress: NHANES 1999-2006.

Authors:  Kelly K Ferguson; Rita Loch-Caruso; John D Meeker
Journal:  Environ Res       Date:  2011-02-23       Impact factor: 6.498

2.  Environmental phenol associations with ultrasound and delivery measures of fetal growth.

Authors:  Kelly K Ferguson; John D Meeker; David E Cantonwine; Bhramar Mukherjee; Gerry G Pace; David Weller; Thomas F McElrath
Journal:  Environ Int       Date:  2017-12-30       Impact factor: 9.621

3.  Repeated measures of urinary oxidative stress biomarkers during pregnancy and preterm birth.

Authors:  Kelly K Ferguson; Thomas F McElrath; Yin-Hsiu Chen; Rita Loch-Caruso; Bhramar Mukherjee; John D Meeker
Journal:  Am J Obstet Gynecol       Date:  2014-08-08       Impact factor: 8.661

4.  Exploration of oxidative stress and inflammatory markers in relation to urinary phthalate metabolites: NHANES 1999-2006.

Authors:  Kelly K Ferguson; Rita Loch-Caruso; John D Meeker
Journal:  Environ Sci Technol       Date:  2011-12-01       Impact factor: 9.028

5.  Screen and clean: a tool for identifying interactions in genome-wide association studies.

Authors:  Jing Wu; Bernie Devlin; Steven Ringquist; Massimo Trucco; Kathryn Roeder
Journal:  Genet Epidemiol       Date:  2010-04       Impact factor: 2.135

6.  HIGH DIMENSIONAL VARIABLE SELECTION.

Authors:  Larry Wasserman; Kathryn Roeder
Journal:  Ann Stat       Date:  2009-01-01       Impact factor: 4.028

Review 7.  Paraben esters: review of recent studies of endocrine toxicity, absorption, esterase and human exposure, and discussion of potential human health risks.

Authors:  Philippa D Darbre; Philip W Harvey
Journal:  J Appl Toxicol       Date:  2008-07       Impact factor: 3.446

8.  Fast FSR variable selection with applications to clinical trials.

Authors:  Dennis D Boos; Leonard A Stefanski; Yujun Wu
Journal:  Biometrics       Date:  2008-09-29       Impact factor: 2.571

9.  Interaction analysis under misspecification of main effects: Some common mistakes and simple solutions.

Authors:  Min Zhang; Youfei Yu; Shikun Wang; Maxwell Salvatore; Lars G Fritsche; Zihuai He; Bhramar Mukherjee
Journal:  Stat Med       Date:  2020-02-26       Impact factor: 2.373

10.  Bayesian kernel machine regression for estimating the health effects of multi-pollutant mixtures.

Authors:  Jennifer F Bobb; Linda Valeri; Birgit Claus Henn; David C Christiani; Robert O Wright; Maitreyi Mazumdar; John J Godleski; Brent A Coull
Journal:  Biostatistics       Date:  2014-12-22       Impact factor: 5.279

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.