Literature DB >> 34898198

BesC Initiates C-C Cleavage through a Substrate-Triggered and Reactive Diferric-Peroxo Intermediate.

Olivia M Manley1, Haoyu Tang2, Shan Xue3, Yisong Guo3, Wei-Chen Chang2, Thomas M Makris1,2.   

Abstract

BesC catalyzes the iron- and O2-dependent cleavage of 4-chloro-l-lysine to form 4-chloro-l-allylglycine, formaldehyde, and ammonia. This process is a critical step for a biosynthetic pathway that generates a terminal alkyne amino acid which can be leveraged as a useful bio-orthogonal handle for protein labeling. As a member of an emerging family of diiron enzymes that are typified by their heme oxygenase-like fold and a very similar set of coordinating ligands, recently termed HDOs, BesC performs an unusual type of carbon-carbon cleavage reaction that is a significant departure from reactions catalyzed by canonical dinuclear-iron enzymes. Here, we show that BesC activates O2 in a substrate-gated manner to generate a diferric-peroxo intermediate. Examination of the reactivity of the peroxo intermediate with a series of lysine derivatives demonstrates that BesC initiates this unique reaction trajectory via cleavage of the C4-H bond; this process represents the rate-limiting step in a single turnover reaction. The observed reactivity of BesC represents the first example of a dinuclear-iron enzyme that utilizes a diferric-peroxo intermediate to capably cleave a C-H bond as part of its native function, thus circumventing the formation of a high-valent intermediate more commonly associated with substrate monooxygenations.

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Year:  2021        PMID: 34898198      PMCID: PMC8876372          DOI: 10.1021/jacs.1c11109

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  44 in total

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Journal:  J Biol Chem       Date:  2004-04-15       Impact factor: 5.157

2.  Reaction mechanism of Escherichia coli cystathionine gamma-synthase: direct evidence for a pyridoxamine derivative of vinylglyoxylate as a key intermediate in pyridoxal phosphate dependent gamma-elimination and gamma-replacement reactions.

Authors:  P Brzović; E L Holbrook; R C Greene; M F Dunn
Journal:  Biochemistry       Date:  1990-01-16       Impact factor: 3.162

3.  Structural and spectroscopic characterization of (mu-hydroxo or mu-oxo)(mu-peroxo)diiron(III) complexes: models for peroxo intermediates of non-heme diiron proteins.

Authors:  Xi Zhang; Hideki Furutachi; Shuhei Fujinami; Shigenori Nagatomo; Yonezo Maeda; Yoshihito Watanabe; Teizo Kitagawa; Masatatsu Suzuki
Journal:  J Am Chem Soc       Date:  2005-01-26       Impact factor: 15.419

4.  Oxidative Decarboxylase UndA Utilizes a Dinuclear Iron Cofactor.

Authors:  Olivia M Manley; Ruixi Fan; Yisong Guo; Thomas M Makris
Journal:  J Am Chem Soc       Date:  2019-05-22       Impact factor: 15.419

5.  Direct hydrogen-atom abstraction by activated bleomycin: an experimental and computational study.

Authors:  Andrea Decker; Marina S Chow; Jyllian N Kemsley; Nicolai Lehnert; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2006-04-12       Impact factor: 15.419

6.  Discovery of a pathway for terminal-alkyne amino acid biosynthesis.

Authors:  J A Marchand; M E Neugebauer; M C Ing; C-I Lin; J G Pelton; M C Y Chang
Journal:  Nature       Date:  2019-03-13       Impact factor: 49.962

7.  An Unusual Route for p-Aminobenzoate Biosynthesis in Chlamydia trachomatis Involves a Probable Self-Sacrificing Diiron Oxygenase.

Authors:  Yamilet Macias-Orihuela; Thomas Cast; Ian Crawford; Kevin J Brandecker; Jennifer J Thiaville; Alexey G Murzin; Valérie de Crécy-Lagard; Robert H White; Kylie D Allen
Journal:  J Bacteriol       Date:  2020-09-23       Impact factor: 3.490

8.  Crystal structure of CmlI, the arylamine oxygenase from the chloramphenicol biosynthetic pathway.

Authors:  Cory J Knoot; Elena G Kovaleva; John D Lipscomb
Journal:  J Biol Inorg Chem       Date:  2016-05-26       Impact factor: 3.358

9.  New gene responsible for para-aminobenzoate biosynthesis.

Authors:  Yasuharu Satoh; Masahiro Kuratsu; Daiki Kobayashi; Tohru Dairi
Journal:  J Biosci Bioeng       Date:  2013-08-20       Impact factor: 2.894

10.  A Mononuclear Non-heme Iron(III)-Peroxo Complex with an Unprecedented High O-O Stretch and Electrophilic Reactivity.

Authors:  Wenjuan Zhu; Semin Jang; Jin Xiong; Roman Ezhov; Xiao-Xi Li; Taeyeon Kim; Mi Sook Seo; Yong-Min Lee; Yulia Pushkar; Ritimukta Sarangi; Yisong Guo; Wonwoo Nam
Journal:  J Am Chem Soc       Date:  2021-09-16       Impact factor: 15.419

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  2 in total

1.  Self-sacrificial tyrosine cleavage by an Fe:Mn oxygenase for the biosynthesis of para-aminobenzoate in Chlamydia trachomatis.

Authors:  Olivia M Manley; Han N Phan; Allison K Stewart; Dontae A Mosley; Shan Xue; Lide Cha; Hongxia Bai; Veda C Lightfoot; Pierson A Rucker; Leonard Collins; Taufika Islam Williams; Wei-Chen Chang; Yisong Guo; Thomas M Makris
Journal:  Proc Natl Acad Sci U S A       Date:  2022-09-19       Impact factor: 12.779

2.  Substrate-Triggered μ-Peroxodiiron(III) Intermediate in the 4-Chloro-l-Lysine-Fragmenting Heme-Oxygenase-like Diiron Oxidase (HDO) BesC: Substrate Dissociation from, and C4 Targeting by, the Intermediate.

Authors:  Molly J McBride; Mrutyunjay A Nair; Debangsu Sil; Jeffrey W Slater; Monica E Neugebauer; Michelle C Y Chang; Amie K Boal; Carsten Krebs; J Martin Bollinger
Journal:  Biochemistry       Date:  2022-04-05       Impact factor: 3.321

  2 in total

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