Literature DB >> 34894420

DNPSOUP: A simulation software package for dynamic nuclear polarization.

Chen Yang1, Kong Ooi Tan2, Robert G Griffin3.   

Abstract

Dynamic Nuclear Polarization Simulation Optimized with a Unified Propagator (DNPSOUP) is an open-source numerical software program that models spin dynamics for dynamic nuclear polarization (DNP). The software package utilizes a direct numerical approach using the inhomogeneous master equation to treat the time evolution of the spin density operator under coherent Hamiltonians and stochastic relaxation effects. Here we present the details of the theory behind the software, starting from the master equation, and arriving at characteristic operators for any section of density operator time-evolution. We then provide an overview of the DNPSOUP software architecture. The efficacy of the program is demonstrated by simulating DNP field profiles on small spin systems exploiting both continuous wave and time-domain DNP mechanisms. Examples include Zeeman field profiles for the solid effect, Overhauser effect, and cross effect, and microwave field profiles for NOVEL, off-resonance NOVEL, the integrated solid effect, the stretched solid effect, and TOP-DNP. The software should facilitate a better understanding of the DNP process, aid in the design of optimized DNP polarizing agents, and allow us to examine new pulsed DNP methods at conditions that are not currently experimentally accessible, especially at high magnetic fields with high-power microwave pulses.
Copyright © 2021 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Dynamic nuclear polarization; Frequency swept- integrated solid effect; Magic angle spinning; NOVEL; Solid and Overhauser effect, cross effect; TOP-DNP

Mesh:

Year:  2021        PMID: 34894420      PMCID: PMC8819672          DOI: 10.1016/j.jmr.2021.107107

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  52 in total

1.  Quantum mechanical simulation of solid effect dynamic nuclear polarisation using Krylov-Bogolyubov time averaging and a restricted state-space.

Authors:  Alexander Karabanov; Anniek van der Drift; Luke J Edwards; Ilya Kuprov; Walter Köckenberger
Journal:  Phys Chem Chem Phys       Date:  2012-01-20       Impact factor: 3.676

2.  Highly efficient, water-soluble polarizing agents for dynamic nuclear polarization at high frequency.

Authors:  Claire Sauvée; Melanie Rosay; Gilles Casano; Fabien Aussenac; Ralph T Weber; Olivier Ouari; Paul Tordo
Journal:  Angew Chem Int Ed Engl       Date:  2013-08-16       Impact factor: 15.336

3.  Theory for cross effect dynamic nuclear polarization under magic-angle spinning in solid state nuclear magnetic resonance: the importance of level crossings.

Authors:  Kent R Thurber; Robert Tycko
Journal:  J Chem Phys       Date:  2012-08-28       Impact factor: 3.488

4.  Off-resonance NOVEL.

Authors:  Sheetal K Jain; Guinevere Mathies; Robert G Griffin
Journal:  J Chem Phys       Date:  2017-10-28       Impact factor: 3.488

5.  De novo prediction of cross-effect efficiency for magic angle spinning dynamic nuclear polarization.

Authors:  Frédéric Mentink-Vigier; Anne-Laure Barra; Johan van Tol; Sabine Hediger; Daniel Lee; Gaël De Paëpe
Journal:  Phys Chem Chem Phys       Date:  2019-01-23       Impact factor: 3.676

6.  Time domain DNP with the NOVEL sequence.

Authors:  T V Can; J J Walish; T M Swager; R G Griffin
Journal:  J Chem Phys       Date:  2015-08-07       Impact factor: 3.488

7.  Theoretical aspects of Magic Angle Spinning - Dynamic Nuclear Polarization.

Authors:  Frederic Mentink-Vigier; Ümit Akbey; Hartmut Oschkinat; Shimon Vega; Akiva Feintuch
Journal:  J Magn Reson       Date:  2015-07-13       Impact factor: 2.229

8.  Quantum mechanical MRI simulations: Solving the matrix dimension problem.

Authors:  Ahmed J Allami; Maria Grazia Concilio; Pavan Lally; Ilya Kuprov
Journal:  Sci Adv       Date:  2019-07-19       Impact factor: 14.136

9.  Three-spin solid effect and the spin diffusion barrier in amorphous solids.

Authors:  Kong Ooi Tan; Michael Mardini; Chen Yang; Jan Henrik Ardenkjær-Larsen; Robert G Griffin
Journal:  Sci Adv       Date:  2019-07-26       Impact factor: 14.136

10.  Higher order amyloid fibril structure by MAS NMR and DNP spectroscopy.

Authors:  Galia T Debelouchina; Marvin J Bayro; Anthony W Fitzpatrick; Vladimir Ladizhansky; Michael T Colvin; Marc A Caporini; Christopher P Jaroniec; Vikram S Bajaj; Melanie Rosay; Cait E Macphee; Michele Vendruscolo; Werner E Maas; Christopher M Dobson; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2013-12-13       Impact factor: 15.419

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  1 in total

1.  Time domain DNP at 1.2 T.

Authors:  T V Can; K O Tan; C Yang; R T Weber; R G Griffin
Journal:  J Magn Reson       Date:  2021-06-07       Impact factor: 2.734

  1 in total

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